RnoINT0010184 @ rn6
Intron Retention
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2658868-2659370:+
Coord C1 exon
chr3:2658868-2659072
Coord A exon
chr3:2659073-2659205
Coord C2 exon
chr3:2659206-2659370
Length
133 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CTCCCCTCCTGGACCCCCAGGTA
3' ss Score
8.58
Exon sequences
Seq C1 exon
TCCCTGATGTCCACAACAGCCTTCGGCCTGGGTTCCAAGTACTTTGCTCTGTATGAAGTGGCAGGTGTGGGCATCCAGTGGCACACGTTCAGCCAGTCCCCAGTGGAAGGGGATGACTTCAACCTGCTCCTTGCTGTCACCATGCTGATGGTGGACACAGTGGTCTATGGCGTACTCACTTGGTACATTGAGGCTGTGCACCCAG
Seq A exon
GTACAGGCCGTCTGTAGAGGGAGCAGGGTGGGAAACGGTCGCTGGGCTTCTGCCTTCCTGTCTGTGGCATTTGGCCCTGTGGGGGATAGTCACCTCCAGGCCCTTGGTCAGCTCTCCCCTCCTGGACCCCCAG
Seq C2 exon
GTATGTATGGGCTGCCCCGGCCCTGGTACTTCCCACTACAGAAGTCCTATTGGCTGGGCAGTGGGCGGACAGAGACCTGGGAGTGGAGCTGGCCATGGGCACACGCACCACGCCTCAGCGTTATGGAGGAGGACCAGGCCTGTGCCATGGAGAGCCGGCACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268:ENSRNOT00000020339:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(17.3=88.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGAAGTGGCAGGTGTGGG
R:
CTCCACTCCCAGGTCTCTGTC
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]