RnoINT0010213 @ rn6
Intron Retention
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2666928-2667201:+
Coord C1 exon
chr3:2666928-2667020
Coord A exon
chr3:2667021-2667098
Coord C2 exon
chr3:2667099-2667201
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCACACCCGTGTCCCCCCAGGTT
3' ss Score
9.78
Exon sequences
Seq C1 exon
CATGGAGGAATGCGAGGCTGTGTGCACACGGCTGGCCATCATGGTGAATGGACGGCTGCGCTGCCTGGGGAGTATCCAGCACCTCAAGAACAG
Seq A exon
GTGAGTCAAGCAGGGGTGCAGAAGGCGGGCGAGCTATCAGACCACACAGGGCTCCTGGCCACACCCGTGTCCCCCCAG
Seq C2 exon
GTTTGGGGACGGCTACATGATCACTGTAAGGACCAAAAGCAGCCAGAACGTGAAGGATGTGGTGCGGTTCTTCAACCGGAACTTCCCAGAGGCCATGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268:ENSRNOT00000020339:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGGAATGCGAGGCTG
R:
TTGAAGAACCGCACCACATCC
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]