RnoINT0010435 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98385145-98388637:-
Coord C1 exon
chr10:98388590-98388637
Coord A exon
chr10:98385247-98388589
Coord C2 exon
chr10:98385145-98385246
Length
3343 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TTTTTTCTCTTATTAAGCAGACC
3' ss Score
6.6
Exon sequences
Seq C1 exon
TCCAGAAAGGCTGGAAAAACTGGAGTTATGTGTGATTCCTTGGTTGGG
Seq A exon
GTAAGGGAAGATGTTATATTCAACTGTGCTCTGAAAGTTCTCTTTCCAAGGAACGATCTGCTAGAGTGAAATATCTCTATGAATTCCCACATTGTGACAGTCAATTTCTAGTGTTCACTTGGCTGAACTGTGGAACCGAGCTGATCAACGCTAGTTTAGCCGTGGCTGTTTCACAGTCTGGATGTGAGTTTGCGAAACATGCCCATTGGTGTCCCACCTGTGAATTCAGCAGGCCACACAGTCCAGGAACCAATTCCTGAAAGTACCTGGATTATTGTTTTCTCTCTCCACACATTTCTCTTTTTTTTAATCTGTAGGTTGGCCAGATGTTCGGTATAGTTGTGGTTTATTTTTTGTTCGCTGAGAGCCTGATGAACGCATTAGTCCTTAATTCTGAAAGTCTCCTCTTCCCTTACAGCTCAATGAACAATTTTGCTACATAGTGGTAAAAAGGCTGAGACCTAATTTCAGTTCTGTAGGAGATGGCTGCTCTGCTCTGTGCTCTCCTTCCTGACTGCTCTGATGCACCCGAGCCTCAGACATCCAGGCTAGCCTCATGTCCGTGTTCTCATAATGTTGCTACCTCTGCACCCAAAGTCTCTATCCATCCCACAAACTCGTGGCTACCATGTACTTCATGCACACCACACACACACACACACACACCACACACACACACACACACACACACGCAGGACGTGCTTCCTGATTCTTTGGTGTAGTGCTCTCCTAAGGGTAGGAGACTGACCTGCCAACCACTGGCACCTACACCTAGGATCAGACGTGCCCTTCCAATCAATCCCTGTGGTGCCTTTGGATAAACTCCAGCTCAGCATTAGCTGCTATCAGCATTCAAGAGAGACCTCCCCCTGCCCCAGTAGTCCGTCCAGCAGAAAGCCTCTCCAGCTAGTTGTTTTATTTCCTCTTCTAGAAGGACCCACTAAGTNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTTGTTCGCTGAAGAGCCCTGATGAACGCATTAGTCCTTAATTTCTGAAAGTTCCTCTTCCCTTACAACTTCAATGAACAATTTTGCTACAGAGTGGTAAAAAGGCTGAGACCTAATTTTCAGTTCTGTAGGAGATGGGCTGCTCTGCTCCTGGTGCTCTCCTTCCTGACTGCTCTGATGCACCCGAGGCCTAGACATCCAGGCTAAGCCTCCATGTCCGTGTCTCTGCATAATGTGCTACCTCTGCACCAATAGTCATCTAATGCCATCCACAAAACTTCCGTGGCTCCATGTACTCACTCCACACCACACACACACCACACACAGCACACCACAGCCACACACACACACACGCAGGACTTACTTCCTGATTCTTGGTTACTGCTGCTCCTATAGGGTAGGAGACTGACCTGCCAAAACACTGCACCTTACACCTAGGAGTCAGACGTGCCCTTCCAATCCAATCCCTGTGGTGCCTTTGGATAGACTCCAGCTCAGCATTAGCTGGCTATCGCATTCGAGAGAGACCTCCCCCCTGCCCCAGTAGTCCGTCCAGCAGAAAGCCTCTCCAGCTAGTTGGTTTTTCCTCTTCCTCTCTAAAGACCACTAAGTAAAAAGAAAATCCAACGCATAGAATTATGCCACACAAAAAACGTTGAACATTGCTATGGAAACTTCTCAGAGTCTCTACTTCTTTATTGACTGGGAAGCAGGTATCCTGTGGATAATAGTACCCTCCTTGGATGGAATTAGTGGGCACGGTGCCTACTGTAACCAGCATCCCTTTTCAGAGAAGAGTATTCAGAAAGTTATGGTTTCTCATCAAGCTCACCCTCCAGCAGTGCCTGTCACCTTTACCTTGTCATGAGCATGACGCTAAAACACTAAGCACCACTTAGCCCCGTTCTCAGCTTCCCCCATCCCCCTCAAACACACCTTTACATAATATGCCTACCCCCTTAAAAGGACAACTACTTCCTTTATAATCCATTTCAGTTTGATTCCCCCAGAGGATCAACAACAGCAAGTTGAGAGCATTAGGTCACAGCTTAGGAGTTTTACACCCAGCTAAATCTCAGCCTCAAAGCCAGCTTTACCACCGCCTCAAGCACATGCTCAAACACGATGTCTCTTTCCCGTGGCAAACTTGGAGTGAATTAATATACCTAGTCAGTTCATAACCTGTACAGTAACATGTCTACTTTCATGTTCTATAAAGACAGAGCCAAATTTCCTTGCTCTGGTGAAAAGGATTAAGAGTATTAAGGTCCTCATCCAGTACTTTGAGTCCTTGTAGACATTTTCTTCCATATTTGCACAGGGCACCAATACTGTTTATGACACTGTTGTCCTTGTCATGTGAGAAAAGAAACTGTTAGGATCCAAATCCTGCTATGTTTACTACTTCAGCAATTCAGTGTTTTCCCAGATTAAGTTTTCCTCCCAGGAAAAGTGAAGTATGGTGTTTTTCTCACATTGAATTAATATACCCATTACATTGTACAAGAGATGTTGATTTATATGTAAAGAGCATCCATGACTGGATATTTTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTTGTCTTCTTCTTCTTCTTCTTCCTTCTCTTTTCTTCTTCTCTCTTTCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTCTTCGTCTTTTCTTCTTCTTCTTCTTCTCTTCTTTTCTTTTTCTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCCTTATTCTTCTTCCTATTCTTCTTCTTCTTCTTCTCTTTTCTTCTTCTTCTTCCTCCCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCCTCTTCCTCCCCTCTATCCTCCTCACCCCCTTCCGTCGCCTTCCCTCTCCTCCTGTCTTCTTTTCTCCTCCTTTCCTGTCTCTCCTGCCCTTCTTCTCTTTCTCTCCTGGTCCTCTTCTCCGTCCCCCTCTTTCCATCCTCTGTCCTTCCTCTGTTCTTCCTCTCTTCCGTCCTCCTCTACCGTCTCTTTCTCGGTCTCTCGCCCTCTTCCCTGCCTCGTCTCCTCTCCTGTGCTGTTTAAATGACATTATTTATGTAAGTGATTACTTGTACACATAGAATTTAATACATTTTTGATGTATGTTGTTTAAAGGATACACTTTTAAGGAGTCTCGAAGTCAGAAGAGGAATGGGAAGAAATAGAAGAGAAACCCAGTTGATAAGCAATGAATTGCAGAATCTAAGTCCTTCCTCTGGAGTAAAGGGCAGCTAGGCTCTGACATCTGCAGAAAATTTCTTCTTAAGACCTTAGTATTTATTGACCCTTCTATTTGTTTTTTTTTTTTCTCTTATTAAGCAG
Seq C2 exon
ACCAAGATGGTGAAGAGAGAGATAAACGTGTGGCAACAAACATGGGCCTTATTGTGCAAGAATCTTCTCAGAAAAAAGAGACTGAAAAGAGACACTCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=11.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]