RnoINT0012447 @ rn6
Intron Retention
Gene
ENSRNOG00000032246 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:RGD Symbol;Acc:62086]
Coordinates
chr1:189514553-189521458:+
Coord C1 exon
chr1:189514553-189514620
Coord A exon
chr1:189514621-189521310
Coord C2 exon
chr1:189521311-189521458
Length
6690 bp
Sequences
Splice sites
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
3' ss Seq
AAGGTTCACTTTCTTTGCAGGTG
3' ss Score
9.55
Exon sequences
Seq C1 exon
GAGAAATTGGCTTTCTCTCCCATTAAGCAGGTCTACTATCACTCCAGCTGTGGGAAGCAGTATCTTTA
Seq A exon
GTGAGTATCCTATTTCTTTTCCTGTGTAAGACTTCCTGCAACTGTGCAGGCTTTCTTTATAAACGTTTAGCAAACAAAACCCAGCAAGTCCAGAAAATGCTCTGTGAATGCATGATGGCAGAGCTGTTTCTCTCAGAATCTTTCAGCTGCCATGGGAACAGAGGAGGTGGTGGGAAGAGAGCACCCACAGGGCACTGCAGGCAGAGAGGCTGAGTTTTCACTTTAGGCTTTTGGGTGGGATTTGGGTTTTAATGCTGGGTTCATGATAAAACGTTTTGGGAAGAAAATTAAGTGAGTAGGGGCCAAATGTTTTCTTTGTTCCCTTCTTGTTTGACTGTCCCCTGCTCAATGACAGATGAAAGTTCATCTCCTAAGTATTCAAAAGTACATAGATTACCTCCTAAAAACATCATCTCTCTAGGACAAGGGTCATTCTAAAACAGTATATTGATGGTGGGAGGGTGGGAGTTAAGGTAAGGATTTTTTGTGGATGAGAACCATGGCGTTTTCCTGTGCTTTGAGGCTTTGTATTTGCCAAACTGCTGTTGTTATTTGGGCTACTCGGGGGAAGGGCTTCGTGGAGATGTGGGAAGGTGGAAGATCCCTCTGCCCCGCCATCTCTATGGACCCGAAGTTCATATTTCAGATGAGATTTTAAATTCTTTCAAAAGCATATCCATCCAGACAGCGGTGCCTTTCTTAGAATTTGTCTTAGCAACACTTCGAGGCTTGGTGTAAAGTGGAGATTTACCATTCAGAAGTGATCTTTTCATCCACCTGCGAGGGGTTTTACAAATCTGGGAAGTGGATGCTGGAAGAGGATAAGAGCATTGTAAAGGCAGGGACTGACAGCCTTGTTGGGAAGAAAGAAATATTATGGGTTTGATGAAGGGGTGCTGATATTTCTTTTTTTATTTAAAATGTGCTTAGGATCATTTTAAGTTCCAATTGACTGGTCAATTTTCTGTTCTTTTAAAAATATTGTGAATTTTAAAATGTTCATTTGCGATAAGTTCTTAGTATCCCCATTATTGCATACTTACCCATGCATTTTGATCATGTCACCCTTTATTACCCTCTCCCATCTCCCTCCAGCTCCTGCCAAGCCCCTGCTTCTCCCTGAGAAGCCCCTTCCAGTCTCAATCTGTCCTGTACTGTTCCGTGAGGGTTTTGCATGAGCATGGGTGGGTGGCTATTTACTAGAATGTTTATGAATGAGTTATCAGTGGCTACATCAATGTACTTTTCAAAGGTTCTGAATGGGAGAGTTTTGTATGGGGCTAGGGGAGGAACAACAAACACTGAACTCTGATTCTGCTTGGCATTGGCAAGGTGAAGATACTGTATTTATCCCCCGGGGTAAACACTTGCACAGTTGTTTAATAGTCTATAAACTTGGGGAGATTGGTGGTCTTATGTTAACAGAAATATTCTCAGCATTTGATATAGGCCTGTCTTGGGATGAATGGACACACTGTTCAGTGGGTGTGTGTATGTTTGAGGGTGGTGTGTTTCTCTGGAATGTGGAACCATAAATCAATCCAAAATGCTTAGCACATTGTAGCCACTTGTCAGATCTCAGCAAAACTGGTGCATCCCTAGAGACACTTTCCAAAATAGCCTTGTTTTCTCCTGCTTAGCCTATTTTCCTTTTCACATAACATTGTTTATTCTTTTTACTTCATTTACATGTGCCAGCCATGATAGTAGGCAGGACTGTGTCTCTATCCCCCAATATGCTATCTATATCTGCAACATTTTAAACACTCAAGCAATATTTATTGAATAGATAAATGAATCATAGTAACCTACAAGTAATATGTCTGAACCAGACCAAATTCTTGCCTGAACCAGGAACTATTTCTTCTTCTTCTTCTCTTTCTCTTCCTCCTCCTTCTTTCTCCTCTTCTTCTTCCTCCTTCTCTTCCTCATCCTCCTCCTCTTCTTCTTCTGTAGGTCTTCACTTTCTCATTTCCCCCACCACTTTCTCACTTTTTAATTGGGTACTTTATTTACATTTCAAATGTTATCCCCCTCCCAATTCCTCTCCCTTGAAAACCCCCAATTCTACCCTCCTCCCCCTGCCTCTCTAAGGGTGATAACCTACCCACCCACTCCTGCCCCACCATCCTATCATTCTCCTATGCTGGGGCATTGAGCCTTCCTTCACAGGACCCAGGGCTTCCCCTCCCATTGATGACAGAAAAAGCCATTCTCTGCTATATATGCAGTTGGAGCCATGGATCCCTCCATGTGTACTCTTTGGTTGGTGGTTTAGTCCTTGGGAGCGCTGGGGAGCTTGGTGGTTGATATTGTTTTTCCTCCCATGGGGCTGCAAACCCCTTCTGCTCCTTCGGTTCTGCCCCCAACTTCTCGATTGGGGTTCCTGTGCTCAGTCCAATGTTTGGGTGCCAACATCCACATCTACATTCAAGGTTCTGACAGAGCCTCTCAGGAGACATCCACATCAAGTTCCTGTCTGCAAGCACTTTCTAGCATCAGCAAGTATTTGGGTTTGGTGGCTGCACATGGGAAGGACCCCTAGGTGGGGCAATATACTTGTTAACTATTTTTAAATAACATTTGTATTAGGAGAAATGGCTTCAATTATTCATTTAAATTGCAAAATGATAGGGGCAACTCAAGGGATCATCAATGATTAATGAAATAATATGGCAGCTGTTTAGTACAATTCAATATAGCTATTTTTTTAAGGACTGAATAAAGAGCTCTATGTACTGATATAAAAAGACCTCCAAAACCACATTAGTGAAAACAGATTGGATGTGTTGATAGTGAAAATCTCAGGTTACCTACTGTACACAGCTGGAGGGAAAACAGCTGGTGGTCATATCTGAGAGGCCAGGAAGAACAATGGCTCCTGGGAGCCATTACAACGAAATATAAAAACTTCAAGACAGAAAGGGGCATTTTTAAATGTATATCTAAGGCTTTTGAGCCATTTGAAGACATTGTACCAAACAGTAAAGGTGGGTCTGCTTCTGAGAATGTGTTGTTGGTTACCTCTCCATCAGTCCAACTTTCAGTCTTCTGCACCGGGGCAGAAAGGCAAAGTTGAAAGAAACTCAATCCTAAGTCTGTTAAGAAGATGGAGTGCAGCCAAATAAGCAGCCTTGAGGCCTTAATCCTGGGGAAACAGCCTCAGAGAAATACCTGCTTTAAAGAGCAGGCTGCTTTTTTAGCCTTGAATTTCTGTCATTGCTTTTTCTCCACAACTATTAGGTCAAAGAACATTTTGGGACCTAGAAAAAGCTCTTACCTTGGGAAATTTCCTCCTTATTTTTCTTGTATTTTAAACTTCCTGTTTCGTGTGAGTTCAGTTCTGAGCCCTCAGCCAGACAGATCCTCAGTAGATTCTGCAGCAACAGAATGGTACTACGCCAGCTCTTAACAGTGCCCAGTGCCGGTGACCAGAGCCACACATGACCATCAAGCATTGAAGTACACTCATTGTAATCAAGGAACTGAGTTTTCTTTTGTTTTACTTCCTCACTTTTATTAGTTCTTTGAGAATTTCAAACAATGTGTTTTGATTATTTTTACCACCAGCAGCCACTCCTCACAAATCTATAAGGAAGCAGTGTTTCTTGGACACAGTGGGGCAGGTACACAGGAACTCAGAAACTTACCACATCAGGCACAAGGTCTGAGCAAGCTCAAAAGTCCCAGCAGAGGGAGGAAGGCGGGCACAAAGCTCCAAACCTTAGTTAAGGCATTCTTGGCAATGAACTGACTTTAAACTTGTATTTATATTAATGGAAACTGTCTCATGTGGATAATGCATGTAGTCATATAATTCTTGTTAAGGCAGTAGATACACCTCTTAAGACAACTGTAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAGACAACTGTAACTCTGCAGTTAAAAATTCCCTCTTCCTTTACCAATCCTACAACAGATAGAGGCCTTATATCCAAAATATACAAAGAACTCAAGAAGTTAGACCGCAGGGAAACAAATAACCCTATTAAAAAATGGGGTTCAGAGCTAAACAAAGAATTCACAGCTGAGGAATGCCGAATGGCTGAGAAACACCTAAAGAAATGTTCAACATCTTTAGTCATAAGGGAAATGCAAATCAAAACAACCCTGAGATTTCACCTCACACCAGTGAGAATGGCTAGGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGACTGGTAAAACCATTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAATTGGACATTGAACTGCCTGAGGATCCAGCTATACCTCTCTTGGGCATATACCCAAAAGATGCCTCAACATATAAAAGAGACACGTGCTCCACTATGTTCATCGCAGCCTTATTTATAATAGCCAGAAAATGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATATTACTCAGCTATCAAAAACAACGACTTTATGAAATTCGTAGGCAAATGGTTGGAACTGGAAAATATCATCCTGAGTGAGCTAACCCAATCACAGAAAGACATACATGGTATGCACTCATTGATAAGTGGCTATTAGCCCAAATGCTTGAATTACCCTAGATGCCTAGAACAAATGAAACTCAAGACGGATGATCAAAATGTGAATGCTTCACTCCTTCTTTAAATGAGGAAAAAGAATACCCTTGGCAGGGAAGGGAGAGGCAAAGATTAAAACAGAGACTGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACAGCCATCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGACCGACAGGAGCCGGATGTAGATCGCTCCTGAGAGACACAGAATACAGCAAATACAGAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAATAGGTCCCCCGTTGAAGGAATCAGAGAAAGAACTGGAAGAGCTTGAAGGGGCTCGAGACCCCAAAAGTACAACAATGTCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAATACTATACATGGACTGACCCTGGACTCTGACCCCATAGGTAGCAATGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCCAGTGAACTAGACTGGTGGGGAGAGGGTGGCAATGGGGGGAGGGTTGGGAGGGGAACACCCATAAGGAAGGGGAGGGGGGAGGGGGATGTTTGCCCGGAAACCGGGAAAGGGAATAACACTTGAAATGTATATAAGAAATACTCAAGTTAATAAAAAAAAAAATTCCCTCTTCCGAAAAAGCTGTTTAGTCAGTCAATAAGTATTTACACACACACACACACACACACACACACACACACACACACACACACACACACAAACTCAAAGAAAGCTGCGTGTCTCTGACGGCCAAGTTTTGGGTTTAAAGGCTAACATTATTTTTCAGTTAGTTTTAACTTCAATTGGATCAGAAAACTGGATCAAAATGCATATACTACAAGGCAAAGGTGGCAGGACTCGTAGGGATAGAAGCCTGAGTGTAACAGACAAGAGGTCTGGGTCCTCACAGAATTTATAGGCTTGCACCACCAGACCACTATAGACCATGACTTATCCAGTCTCCTGCTCACTTTTAACAGCTTTGTGAATTAACAGTGGCTCTCCCATCTTTAAATAGTTGAGGGGAAAAGTGGAACAATACTGTGTAGCACTGAAAAGTGCATGCCAGTCAAGTATCCATGGTCACAGAAAGCGTTTGGAAGAATTTGAGCACATTTTCTTACTTATGTACCACCCACATCTATGGGGGAGTCAGGTATCCCAAGAGAGACAATATGGCCCAGGAAGTCACCATTTACCAACCCTCATTCCATTGAAAAGCAGTAGGCCAGGTGCTATGAGGACAATTTTGCATGGCTGAGCTCAGGTTTCAGTTAAGCACTCCTCTCTGACAGAGGTTCTCTCAGTCTCTGTACTAACAAAAGGTGAAACTGAGAGCCGGCTCACTCTTCAAATACGATTGCAGTGACTAGGTGGCAAATACACCCTACTCCATGATTGTCTGACTCAACAGGCAATGGACTTAGCCAACATCCTAAAGACCATTGTGTCTCACTTGAACACAGAAACTTGTGTGGCGAATCTTGTTAAAAGATTTAAATCCACTAATTCAACTGATCTTGAGTGGGACCTAAAGATTATGCACTTCTGACAAGTGCCCAAGTGGATCAGTGATTCATAGATCCCAGGCTCTGAATGAGTGGATCTCAACTTGGGTTACATTACAACTCTGAGTAAAATGTGAAACATCACATAGGTCCACTCCCCAAGTGCTAACTTAATTGGCCAATGATCCAGGCATTAAAATTTTTATAGAAATCTTTCCAGGTGATGCAATGCATAAATGGGATATCAAGTCACTGCTTTGCTGGAATCCTGCTGGCCCAAAGTAAAGCCATTCAAATGAGAGTCTAAAGACCCAAGTTCAAACCCTCATGCCATAGGGTAAAGTCTGCTGCTTCCTTTGCTTAAGGTTCACTTTCTTTGCAG
Seq C2 exon
GTGAAAAACAAGGAGGCTCAAGTGGAAAATCTAGAAGAGCTCAAGATCACTGACTTGTGAGCTTCTCACACAAGGAGGTGGACACCAGGAGCGCCTGGGTTTCAAATGCATCCAGTTCATCAACACGATGCCTAACCACCAAATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032246:ENSRNOT00000020039:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]