RnoINT0012630 @ rn6
Intron Retention
Gene
ENSRNOG00000019745 | Actn3
Description
actinin alpha 3 [Source:RGD Symbol;Acc:621792]
Coordinates
chr1:220123977-220124313:-
Coord C1 exon
chr1:220124205-220124313
Coord A exon
chr1:220124118-220124204
Coord C2 exon
chr1:220123977-220124117
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
ATGATCCCTCTGGCCTCTAGAGA
3' ss Score
6.29
Exon sequences
Seq C1 exon
TGAGCTGGACTACCATGAGGCAGCCTCGGTGAATAGCCGCTGCCAAGCCATCTGCGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGATGCACTAGAG
Seq A exon
GTGGGCAGGAGGGCCAGGGAACTGAGGGCAGGGTGATGAGGCCAGCAAGCTGGAAAGGATCTGATCTATGATCCCTCTGGCCTCTAG
Seq C2 exon
AGAATGGAGAAGCTCCTGGAAACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCGCCCTTCAACAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTAGTGCACTCTGTAGAAGAGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019745:ENSRNOT00000026812:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(34.0=100)
A:
NA
C2:
PF0043516=Spectrin=PD(0.1=0.0),PF0043516=Spectrin=PU(32.1=76.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACCAGTGGGATAACTTGG
R:
GAGTGCACTAGCCACACATCC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]