RnoINT0012633 @ rn6
Intron Retention
Gene
ENSRNOG00000019745 | Actn3
Description
actinin alpha 3 [Source:RGD Symbol;Acc:621792]
Coordinates
chr1:220122670-220123073:-
Coord C1 exon
chr1:220122939-220123073
Coord A exon
chr1:220122850-220122938
Coord C2 exon
chr1:220122670-220122849
Length
89 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTGCCTGGGTACCCTTGCAGGAA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GTCAGAAAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAATGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCCAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAG
Seq A exon
GTAAGGGCTTGGAGAGCTAGGCCAACTCAGGGATTGGGGTGAGCCCACTGGGAGTTGTGAGTTCTTATCCTGCCTGGGTACCCTTGCAG
Seq C2 exon
GAAGTAGGGCGGCTGGCAGCTGGGCTGGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGACAGCAGGAGCAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGGGCCTAGTCTTTGACAACAAGCACACGGTCTACAGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019745:ENSRNOT00000026812:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
A:
NA
C2:
PF0043516=Spectrin=FE(56.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCAGGGAAAGGTGGAG
R:
TCAAAGACTAGGCCCTCCTGC
Band lengths:
173-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]