RnoINT0013309 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5551527-5553569:+
Coord C1 exon
chr3:5551527-5551706
Coord A exon
chr3:5551707-5553364
Coord C2 exon
chr3:5553365-5553569
Length
1658 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
3' ss Seq
GGGGTCTTTTCTTCCTGCAGATG
3' ss Score
10.97
Exon sequences
Seq C1 exon
GTGGGAGACTCGAGTCTTGGCACCGTGTCCGGTGACCTGTGGCGGGGGGCGAGTGCCGCTGGCCATTCATTGTGTGCAGCTGGACCACGGGCGCCCTGTGTCTGTACCTCACTCCAAGTGCTGGCCAGCACCTAGGCCAGGCTCCTTCGAGGACTGCAGCCCTGAGCCTTGTCCTGCTAG
Seq A exon
GTGCGTACCTTGCCTGGGAGATGGGCAGTCACGGATCTGAGTTAGATCTGCCATTGGCCCCAGATGATGGGAAGTGCACTTGTGGGTTCTGAGACGGTGACATCGTACACACATTTAAAAAATCTATTTAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAAAATCTATTTAATGTTTATGAGACAGGGTCTCACTATGTGGTCCTGGCTGGCTTGGAACTCCACTTCTCTCTGCCTCAAAGATGTGCATCACCACGTCTGTCTGTCTGTCTGCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTACCTATCTAACCCTGGGGCTCCCAGCTTCTCTTTACCTTTTATTTCAAACAGGATCTCACAAGATGCTCACTAGCTTCCCTCTGTAGCCTAGGTGAACTTAGTGTGGGTACCAAGTCTGCCAGGCGGTTAAAAAGGTTTATTTATTTATTTCTTGTATGAGTGCTCTCTCTGCACGTACACCCGCATGCCACAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGCTGCTGGGATTTGAACTCAGGACCTCTGGAAAAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCACCTGTCAGTCTTTTTTTGTTTGTTTGTTTTAAATCAAGTTGTTTGACTTTTCCTTCTGTATATGTAATGATTTTAAATTTTGTAGTTTAGACTCTACCTGAGACCCACAGCATGTGTGTCTTGCCTTCTTTGTTTTTGCTAAAGTTCCCTATCTGTGCTTTTTATTTTTGCATGTTATGATTATAAATGGTTTAGGGTTTTTTCTTTTTTCTTTCTTTTTCTTTCTTTTTCTTTTTTTCTTTTCTTTTTTCTTTTTTTTTTTTTTGAGACAGTGCCTTGTAGCCCAGGCTAGCTCCAAACTCTCTATGTAACTAAAGATAGCCTTGAATTCTTGAACCTCAGGCCTTCACCTCTCAAGTTGTGGGATAGTAGGCATGTGCCCCCACACCCATCTAAATCGTTGTTTGTTTGTTTGTTCCATGGGAAGTGCGTGCACATGTGGGTTCTGGTTACCACTGAGGTGTTGTGTGGTCGCTCTGTAACCTGCACTGATCTGTCCACAGTCTCTCTTCTTTGCAGGGAACTAGTCCCTCAGCCAGGCAGGATTCTGCCTCAAAGGGCACACAGTCAACTTCAGGTTAATGGTCACAATTAGGGCTATTTGATATGGCTCCTAGTGGGCAGAAGTTAACCACGCCCATCTGTCAGTGCACAGGACGCAGCTATGCAGGATCAGATGCCAGTGGTATAAGGTACAGGCCATACACACCTGAAGTGGTCTTGGTCTGGCTCATCCCGCTGCCTTGGTTCCCAAGGGTTCCAGAGTAGCAGTGGGCCAATCGACGACACAGACATGAAGAGCAATAGTGAAGCTCAATGCTGTTAGTGGAGACCCATGACCAGAGACCAGGCAGACCATTGTTGAAGAAGCTGAGGGTCCTTCAATAGTCCTACACACAGAAGCCCAAATAACTGTCCTTGGGGTCTTTTCTTCCTGCAG
Seq C2 exon
ATGGAAAGTCCTGCCCCTTGGCCCGTGCTCAGCCAGCTGTGGCCTTGGCACTGCCACACAAATGGTGGCCTGCGTGCAGCTTGACCAAGGCCATGACAATGAGGTGGATGAAACTTTCTGTAAGGCTCTGGTGCGGCCCCCCGCCAGTGTTCCCTGCCTCATTGCTGACTGTGCATACCGGTGGCACATCAGCACCTGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=PU(14.3=8.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCTTGGCACCGTGTC
R:
CCGGTATGCACAGTCAGCAAT
Band lengths:
351-2009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]