RnoINT0013680 @ rn6
Intron Retention
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197809255-197810286:-
Coord C1 exon
chr2:197810184-197810286
Coord A exon
chr2:197809392-197810183
Coord C2 exon
chr2:197809255-197809391
Length
792 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
ATCTATATCTTGTCCTTTAGTTC
3' ss Score
7.42
Exon sequences
Seq C1 exon
CCTTGCCCCCCTGAGCAGCCAGACCCCAGGGCCCTGCAGTGTGCCGCCTTTGACTCCCAGGAATTCATGGGCCAGCTGTACCAGTGGGAGCCCTTCACCGAAG
Seq A exon
GTGCAGTTTCTAGTTCCCCTGGCAGGGCGACTCAGGTTTGGGTGGCCCCTCTCTCCCTCCTGGGTGTCCTACTTTGCAGGTCACCCCAGAGGCTTAGCCCAGACCTAGAGAAGGGAGCTGTTTTCTGGGAAGCGATGGGTGGATGGTCAGGACAGGCAGCAGGCTGGCGGAGGGAGCTGGCTAAAAGATGCTGTGATCTGGCAGGGCATGAGTGAGACCTGTTCACTGGTCCCAGCAGGACACTATCTTCTGTTACTCCCAAGTTACTGTCCACTTGGACTTGTGGCTATGTCAACTCCACACTGACAAACCTTCATGAGCTATGAGCCTATGATCGTAGGTGTCGGAGACCCTTTTGAGGAGTGGTAGGATGGCTCAGTGGGTAGAGGGGCTTGCCTCAAGCCTGACGGATGACCCGAGTTTGGTCTCCAGAACCCATGGTAGGAGGAGAGAACCCACTCCTGCAAGGTGACCTCCTTCTCTCACGTGAGCACCCCAATCCTATACACACCTAAAACAAAACCACAAGAATCTTTTCTTGATGGCCAGGTGCAAAACTTTCCCTTTTTAGGAGAATGAAATGGGAGACTTAGTCAAATCGTAAACTCGAGACTACACAGCATAACAAAGATATAAGCCATAAAACCCTAAGCGTGGGAAACTCCCCCTCCCTCCTTCCACACCAACTTCAGGAAGCCTCACACATGATAAAAGGTAGAATGGCTGTCAGGGCTCTGGGGTGCTTCTTCCCGGAGGGACCCCCAGCTAATTAATCTATATCTTGTCCTTTAG
Seq C2 exon
TTCAAGGCTCCCAGCGCTGTGAACTGAACTGCCGCCCCCGTGGCTTCCGATTTTATGTCCGTCACACTGAAAAGGTGCAGGATGGGACCCTGTGTCAGCCTGGATCCCTAGACATTTGTGTGGCTGGACACTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385:ENSRNOT00000074156:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCAGCCAGACCCCA
R:
CAGGCAGTGTCCAGCCAC
Band lengths:
230-1022
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]