RnoINT0017828 @ rn6
Intron Retention
Gene
ENSRNOG00000049733 | Ankrd33
Description
ankyrin repeat domain 33 [Source:RGD Symbol;Acc:1586880]
Coordinates
chr7:142756312-142757143:+
Coord C1 exon
chr7:142756312-142756332
Coord A exon
chr7:142756333-142757013
Coord C2 exon
chr7:142757014-142757143
Length
681 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTAAGCTGCTCTGTCCCCAGACA
3' ss Score
8.2
Exon sequences
Seq C1 exon
TTGGAGACCCTAGAGCCCCAG
Seq A exon
GTAAGGTTGGGGGAGGGGAAACGGTAACCCCTGCCATGAGCTTCCTTTGGGACCTGACCTACATACAGTAAGATGCTTTGACTGCCTGTCTTGGGTCTAGGCAGAAGTGAGACACCCACCGGGGTAAAGGGTTTCCCTGGGGAGCTGGTGCAGCTGTGGGGACATAGCCAACCAGGACTGCAAGAGGAACTGGTCCTTGGTGTACTGTCACAGCTGCCTGCTGAATGAAAAGGGACTTGGGCTGCAGGCAGAGGAGCCACTGTCGCCCCTGGAGCGGACTGGACATGACTGAGGCACCGCCCTGTCCAGGCGGCAAGACACCAAGTCCTGGATGCGGTCTGAAGACGCTGTACTGGGCATGTGTCCACAATGACCTCGCTGAGCTCCAAGCCAGGCTGGACGTCGGGGTGTCTCCAGATGAGGCCTCCCAAGTGGACGGCAATGGGAGGGTGAGATGCCCCAGGGCACACAGGAGTAGCAGAGGATAGCTCAGGCTTCACACGTAGCATCCTGGTCCGGTTCCCCATAGTCCCAGAGTTGTCCCCACACTTTAGATGGGTGGAGACAGTCTCCACAGGGGTTTGGACAGGCCCTGGGGAAGTGCGGATTTAGGGAACAAAGTGGAGGGGGTCCTAAGGAGAGCTTAGTGGAAAGTGGAGGTCTAAGCTGCTCTGTCCCCAG
Seq C2 exon
ACAGGCCTCATGGTCGCATGCTACCACGGCTATGGTTCCATTGTGGCTCTGCTCAGCGGCTGTCCTTTCCTGGACGTGAACCAGCAGGACAAAGACGGGAACACAGCCCTCATGCTGGCGGCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049733:ENSRNOT00000071298:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(7.0=71.4)
A:
NA
C2:
PF127962=Ank_2=FE(60.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]