RnoINT0022632 @ rn6
Intron Retention
Gene
ENSRNOG00000005063 | Atl1
Description
atlastin GTPase 1 [Source:RGD Symbol;Acc:1359232]
Coordinates
chr6:92362808-92365677:+
Coord C1 exon
chr6:92362808-92362879
Coord A exon
chr6:92362880-92365245
Coord C2 exon
chr6:92365246-92365677
Length
2366 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AATCTCTCTTTCTGACATAGATT
3' ss Score
8.01
Exon sequences
Seq C1 exon
GCCACAGCAGAAGCCAACAACCTAGCAGCTGTTGCAACCGCCAAGGACACATACAACAAGAAGATGGAGGAG
Seq A exon
GTAAGGCCTCAGGCTTTAACATGGCATTTCTTCTTTAACCCTTCTTCATTGTCACATCACACCATGTGCATGTGCAGAGAGGGGACTTCGGTGGCACTTAGCTCAGTGTGTATGCATGTATGTGTCACGTGTCTGAACTGCTCTTCTCACTCATACCCACACGCCCTTCCTCAGAAGGCTCTGTCCTCTCCCTTCAAGCTTTTCTCAAACCCTCTAATGGACAAACCTCCCCATTCTGAGCCTGTGCCCCTCTACAGCACATAAAAATAGAACATTACACAATGGGATAATGGGCGTGGGAAGCCGAGACTGGGGAATTGCCACGCAGATGAAGCCAACCTGGCCTATGTGATGAGTTCAAGCCTAGCCTGGGACACAAAGCAAAGGAGACACACAGACAGTACAGTGTTTGGTTCGTTTGTTTTGGTTTCTAGACAGCCCTGGCTGCCCTAGAACTCACTCTGTAGACCATGCTGGCCTCAAATGCACGGAAACCTGCCTACCTCTGCCTCCTGAGTGCTGGAATTAAAGGTATGCACCACCACTAGTCAATCACAATGAACAGTTTTTAAAGCTTTTAAAAATGAAGAGATCTCTCCTAACAAAATATTCTTGTTCACATGTTATTCGAACACATTGCCACACTGGGAGAGTTAAGAGATTAAAAAAAACACGCTACTCTTTCCACTGGGTATACTTAATTCTATTGCTTAATATTTCTCTGAAAACCTGTAGGAAACAAAAATCAACCCTCAAGAACCAACATTTTTATATAATATATTTTCTCATTTTAGTTTTAACTAATGTGAGAAGTGCCAATTTCTCCTTAAAGAGTGAAATCTAAAATTGATGGAACCTTACAATCAAGAGAAACATGGTATATATAAATAGAGAATACGCAGATGTATTGTCAACATTAAAATTGTAGCCAAAGTTAAGGACATGGTTAACTGGAAATCACTCTGTACTGGTTTACGTGCATGCGTGTGTGTAGCGGTCAGGACCCACGCACATGTGAAGGCCAGTGGAGACTGTGGAGCAATTTCCTCCGGTGCTCACCACCTCATTCCTTGAAGAGAGTGTCTCACTCTGAGCTGGAAACAAGCTGGGCCGTGACGTCTAGGACTGCTTGTCTTCACCCCTCAGTGCTGGGGCTATCAGCATGTGCAGCTGTGACCGGTTTTTTCTTTGTTTGTTTGTTTTTTTACACGGTTGTTGGGATTTGACCTCAGGTCCTCATGCTTGTGTAAGCAATTATTTCTACCCACCCAGCCATCTCCCCAGCTTACCTCACAACTTTTTAAAAACTTGAAAGTATAGTTCAAAAAACATTTAATGTGCTTCTCCTCAGTCTAAGAAAATATTCACTTGGCCCCATTTAAAGGAAACCAGTGCAAATGTTAAGAAAAATATACTTCATAGTTCGAGTTCTATTTATTTTAAATTAAACTTTTTTGGTCACAATTACTTCAGTATAATTTGACTTCTAGAAGAACTGAAATGTAAGCAGTTTTCTCCACTTTGTAGACATTCTGTGAACAGTAGTTGGCAATTATGTTGGGTCATGTGAAAAACATTAAAGAACTTCTTTAAGTCATAGTACTATTTCCTGTGTTTTAAAAGAGGAGGGCTGGGCACAGTGTCACACCTTTAATCCCAGCACTTGGACACAGAAGCAGGTGGATTACTGTGAATTTGAGGCCAGCCTGTCTACAGAGCAGAGGGCTGTAATAGTGAGTCCCTGTTGAGAGAGACAGAGACAGAGACAGAGACAGAGGACAGGGACTTTGTTATCCACGCATGGTGGTACAAGCCTGTACTCCCAGCCCTTGGGAGACAGAGGCAGGCAGATCTTTGAGTTGGAGGCCAATCTAGTCTATAGAGCTAGTTCCAGGGCAGCCAGGACTATGCAGAGAAACTCTGTCTCTAGAAACAACAAAACCATAAAAAAGCCTTTATTATATAAGGCAGTGTACTAGCCACATTTGGTAGTTAATCCTCCTGGATATGGAGGTAACTAGTTTAGACTGACATGTATCAGCTTCCTCTGAGAAATTCTGTCATGCAAACATTGCTACATACATACATACATACATACATACATACATACATACATACATACATACACACACCTAGATCTTTAGGTTAGTCACTCAACAATAGCACTTTAATAGGTCGTTCATGTTAGCTGTGCCGTTGACTGACAACACTGTTCTGGTGCAGTGTCACGAGTGATGGAAGTGTAGCCCACCCCTCAGCCCATCACTTATGAAGCATTCCAGTGTACTCCAAGAAAAGGCAGCTACTAGTGAAAATTTGATACAGTTGTTAATTCACATAAACAAAAATCTCTCTTTCTGACATAG
Seq C2 exon
ATTTGTGGTGGTGACAAACCATTCTTGGCCCCCAATGACCTGCAAACCAAGCACCTGCAGCTAAAAGAAGACTCTGTGAAGCTGTTCCGAGGTGTGAAGAAGATGGGTGGGGAAGAATTCAGCCGGCGCTACCTACAGCAGCTGGAGAGTGAAATAGACGAACTCTACATCCAGTACATCAAGCACAATGACAGCAAAAATATCTTCCATGCCGCTCGCACCCCAGCCACACTGTTTGTTGTCATCTTTATCACGTATGTCATCGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTGTGCAACATGATCATGGGACTGACACTCATCACGCTGTGCACCTGGGCATACATCCGCTACTCTGGGGAGTATCGAGAGCTGGGCGCTGTAATCGACCAGGTAGCTGCAGCTTTGTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005063:ENSRNOT00000046085:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(18.0=100)
A:
NA
C2:
PF028419=GBP_C=PD(53.9=47.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]