RnoINT0022633 @ rn6
Intron Retention
Gene
ENSRNOG00000005063 | Atl1
Description
atlastin GTPase 1 [Source:RGD Symbol;Acc:1359232]
Coordinates
chr6:92365246-92366766:+
Coord C1 exon
chr6:92365246-92365677
Coord A exon
chr6:92365678-92366751
Coord C2 exon
chr6:92366752-92366766
Length
1074 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TAAAATTGCCTTTGCTACAGGGA
3' ss Score
6.39
Exon sequences
Seq C1 exon
ATTTGTGGTGGTGACAAACCATTCTTGGCCCCCAATGACCTGCAAACCAAGCACCTGCAGCTAAAAGAAGACTCTGTGAAGCTGTTCCGAGGTGTGAAGAAGATGGGTGGGGAAGAATTCAGCCGGCGCTACCTACAGCAGCTGGAGAGTGAAATAGACGAACTCTACATCCAGTACATCAAGCACAATGACAGCAAAAATATCTTCCATGCCGCTCGCACCCCAGCCACACTGTTTGTTGTCATCTTTATCACGTATGTCATCGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTGTGCAACATGATCATGGGACTGACACTCATCACGCTGTGCACCTGGGCATACATCCGCTACTCTGGGGAGTATCGAGAGCTGGGCGCTGTAATCGACCAGGTAGCTGCAGCTTTGTGGGACCAG
Seq A exon
GTAAGAGCATCTTCTGCTTTCCTTAGTAGATCATGCAGTCAGAAATATGCAGGTGAACATGACTTGGGCCCATTCTTTAAAACCTTACAATATGCCAAGATTGGAATAACTAACTATAATAAGTTAAGTCCTACACAACTACTTTCTAGTTGACATTTTAGTATTTAGAACATACATGCATTTATGGCATTTTTACTTTCTGACTCTAAAATGGTAGTAGTTTTAGAAGTTAATAGTGTAAATAGTGTATGAGCAAACAGTCATTTAGCTGTCGTGACCCCTTGTTAAACTTAACCCAGCACTGGACTGGCAGTGGCTCTGGAGGCGTGTATGTGAACCACAGTCATTAGGCTATACATTATTCCCTTTAAGTATCAGATTACCTCAGACTGTATTTGACCCAGACTTTTACACTAAACACAGCATGAGCCAGAGGTCAGCCTCTGAAGTAGCTGCTTGTGGGTCAGCTGCTGGGCCCTGCTAGTCTAGTTAGCTTCAGCTGAGGGAGTCAGGGCCACCATGGCGTGATGTTCAAATAACTGACTAAGGACAGGAAAGATAGTGGCAAATATATAGAAAAAAATATAGTTAGTAACTTACTAACTCGCTGTTCCAGAAGTCTCTTCAGTTACTTATTGAGATTTACAATTTTATGTTTTGAGCTTTTGACCACTGTGGCCTAGAGGTAGCTGGTAGTAGCACGCACACATCCCAGTGTGAGGAGCACACTTGTGTGTACTCTATAATAGAAGGGTAACTAATGAGAAACCACGCTGAAACTAACGGCTGCCTCACAAGCTACTCACTGTCTTGGCATCTCTCACACACAAGGCTACAGATGTGTAATCTGTGCAAACCTCAAACCTTCCTAGAACACAGTGCTAAAACCTACCTGAAATACAGCATTGGGTTCTTTAAAAATATTTTGATAAAATATGGAATCTAAACTTAAAAATCTTCAAGAGTACTTTTTCTTAATGCTCACATTTGACACTGCAAATGAAATTGAAAACTATTTTATTAATTAAGCAAGATATAACACTTTTCTTTCTTTTAAAATTGCCTTTGCTACAG
Seq C2 exon
GGAAGCACAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005063:ENSRNOT00000046085:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(53.9=47.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]