RnoINT0022638 @ rn6
Intron Retention
Gene
ENSRNOG00000005063 | Atl1
Description
atlastin GTPase 1 [Source:RGD Symbol;Acc:1359232]
Coordinates
chr6:92332280-92334675:+
Coord C1 exon
chr6:92332280-92332384
Coord A exon
chr6:92332385-92334624
Coord C2 exon
chr6:92334625-92334675
Length
2240 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ACTCCTTACCCCACATCAAGGTC
3' ss Score
5.65
Exon sequences
Seq C1 exon
GTTGCAGTGTTACTGATGGATACTCAGGGAACCTTTGACAGTCAGTCAACTTTGAGAGATTCGGCCACAGTATTTGCCCTTAGCACAATGATAAGCTCAATACAG
Seq A exon
GTATGGAATAAAACAAATCTATTTGCGGATGTTCCTTTAACTAAAATTCATGAATAGCGTTTGTTCATACATATGGCAATGAGACAGAGAGAAGGGTAAATGATATGTGTTGCTCAGTCCGCTCCACATGAACAGCCATCGTCACTATAGCTATGGCAGTCTAACCAATTATCAGTTTCTACAATGGCTGCTTTAGTCCAAAGCAGCTTTATTCTTGTTATTTTTCTGTTAAAATTTAGAATAAATTAGAATAATATTAAATTTTATAGCTAAGGGTGTAGCTCACTTGGTAGTGTTTGCCTTGCAACAAGGTCCTGGGTTCAGTCCCCAGCCCCACGTAAAGCGTGGTGGAGAAGGCCTGTTATTCTATACAGAGAAGATGGGAGCAGGGAGACCAAGAGTTTAAAGTCATATTTTTTTGTACAGTGAGACTGAGGCTAGCCTAGTCTACATGTGACCCTGTCTCAAAAAGAAAAGAACAATCTTGTGTCGATGAGATAGCTGTGCGTGCAAAGGTGGAAAGAAAGCAGACCCCACAGAGCTGGCCCCTGACCTCCACCCACAGGTCATGGGGCACTTCCCCTATGCACACACACTGAACATACCAACAAAAATAAAGAAGCCAATTTAAAAGCCTTATATGCAGATTTGGGGACAAGCTATTATAACTTGTTTAGTGAAACAGGATTTATAAACTTACGATGTTATTTTACATTATCAATGAAGTTATTTCCAAATGTGAAAGCTTTAATGTTCATAGCTTTAAAAACAGTTTATATAGATGTAACAGTTACATTTATATATAACCATATGTACTTAAAGCTCTTCCCTTTCTTTTGCTCTTTTTCCCCTTTTTAACAGTACTGTTGGGTGGGGAGGAGGTTTTATAAACTTTCTAAATTGTTCTGAAAGTTAGTGTGCAGCTGAAACAAGTTTAAGGATTACTGTTAGATGCTTTCTGCTTGTTGAAGAGAGCAGGGAGAGAAGACAGTGAAGAAACAAAAGCAGAAGTTTTTTCAAAGGCAAGATAACTTTTAAAGGTGAGAAAGGCAAAGCAGGGTAAGTCCAGGCTGTGCTCATGTGCAGATGGGGGTCTGGAGTTACTGAGCAGGCAGCCGTCGTCTCTGGCCAGTACCTTCCATACCAGCACAAAGGAAGAGGACGGATGGAGTGAAATTTTAAATAAATGACTAACACAAAAGCTATGCTTGTAATCCATGGTTGATACTTCAAAATAAATCTACCTCTTGGGGTTGGAGAGATGGCTCAGACATAAGTAGCACTTTTTGCACTTGCACAAGACCTGGGTTCAGGTCCCAGCTGACACACGGTGGCTCACAGCCATTCATAATTCTAGTTAGTTCCAGTCGATCTTACTCTCTTCCGACTGCTGCAGACACCTGGCACTAAATGTGGTGTATACATGTACATTCAAAGAAAAATTCTTACATATAAATTAAAAAATAATTTTTAGAGGATTGCCACAAGAAATCTATCTATGAAACACAGGCTAGTACTGTAATTCAAAAACCTGCTTCTTTTGATGAATCTTTAAAGTACAGACTCAATATCTGTTTTCTTTAAAGTCAAGAGAAAAGATCATTTGTACAAGCCAATTAAAACCAGTTTAACTTTGCATTACCACTCATTATTTACTACTTATATTTGACCTGAAAAACACTGCATCTTTTTATAGAAAGTCTGTCAAGTCATGTCTATTTTAAATTATTATCTGAGAAATTACACTATTTAAAGAAGTACAAATGGATACTGTTTGTGTCAATATGTAAACATATAAGCAACATTAATTTATCTTTAAAGTTACTAATGTTATCACCTCAAGGAAAATAAAAAGACAACACAAGGTATCACCTTAGCGCTGTGGCGGAGGAGAGAGAGAGGCAGGAACACAAAGCTGTGAGCATGGCGTTCAGAACCTAACTTTTGTGTGGAGTGAGTTTCTGTGAACACAAACAAATCAATAAATTATGAAGAGGTCACTGTAATTTTCCAAACAATTTTCCAGTTGGGCAGGAAGACCAACTTCTGTGAACCCTGCTTTGCGAAGGGCTGAGGCAAGAGACTACAGGTTGAGCACTATGGTGAAACCTCCTTCCTCGGGTCTCATAAATGTTTGTAAGAGAGTTGTTGTATAATAACTGACATCTATGGAAACAGAACTACAAAGTTCTTAGAACGGTGCTGATATCTTCTTTTCTGACTCCTTACCCCACATCAAG
Seq C2 exon
GTCTACAACTTATCCCAAAATGTCCAGGAGGACGACCTTCAGCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005063:ENSRNOT00000046085:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(12.5=100)
A:
NA
C2:
PF0226314=GBP=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]