RnoINT0023469 @ rn6
Intron Retention
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37372183-37374054:-
Coord C1 exon
chr12:37373844-37374054
Coord A exon
chr12:37372303-37373843
Coord C2 exon
chr12:37372183-37372302
Length
1541 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTTTCTCCCGGCACCCACAGGCA
3' ss Score
8.87
Exon sequences
Seq C1 exon
GCACTTCAGGAAGAAGTTCAACATCTACCTGGTCTCGGTCCCCGAGATCCTGTTTATGCTCTGCATCTTTGGGTACCTGATTTTCATGATCATCTACAAGTGGCTGGCGTACTCGGCAGAGACCTCCAGAGAGGCCCCCAGCATCCTCATCGAGTTCATTAACATGTTCCTGTTCCCGTCCAGTGAGACACACGGCCTCTACCCGGGGCAG
Seq A exon
GTGAGTGCCTCTGCCTGGTGACCACCCTGCACTCAGCAGTCTCCCATAGCCTGGGAAGAAGGAAGAGGCCAAACTCGGGAGTGAGGGAGCGTCCTGTTCTGTTCTGTTTCTCCTTTTGCAGTGTTCTCAGGCTATCATCATCTGGGGGCAGACTTCATTTAGATTTTTTTTTCCCTCAAGTTTTGCAAGACAGGGTTTCTCTGTGTCACCCTGGCTGTCCCAGACCTCACTCTGTAGACCAGGCTGACCTCAAACTCAGGTCCTCCTGAGTGCTGGGATTAAAGACGTGCACCCCCATCGGCGCCCAGCTTACATATCGTCCTTGCTCCGGGTCCCTGATACTCTCCGTATGGTTCTAATATCTTAGTGTGTGACGCCAGTGCAAGCCCCGACCTAAAATGTGTACGTTGTTACCTGTGTCTACAGGCCCGAGGTCAGCTTGGACGTCATCCCTCGGGTGTCATCCACCTGTCCTTTTTGTTGGTGTGTGTGGTATGCGGTATGTGTGTGTGGTGTGTGTATGTGGTGTGGGGTGTGTGTGTGTGGTGTGGGGTATGTGGTGTGTGTGTGTGTGGTGTGGGGTATGTGGGGTGTGTGTGTGTGTGTGGTGTGGGGTATGTGGTGTGTGTGTGTGTGTGTGGTGTGCATGTGGTGTGGGGTGCGTGTATGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTATGGTGTGTGTGTGTGGTGTGCATGTGGTGTGGTGTGTGTGTGTGTGTGTGGTGTGCATGTGGTGTGGGGTGCGTGTATGTGGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGCATGTGGTGTGGGGTGCATGTATGTGGTGTGGTGTGTGTGTGTGGTGTGCATGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGCATGTGGTGTGGGGTGCATGTATGTGGTGTGGTGTGCATGTGGTGTGGTGTGTGTGTGTGTTTGTGTGTGTGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTTTGAAAGTGAGCTCTAGGATCTGACTCAGCTGGACCGAGTCATTTCCCCAAGCCTCCACTTAGAGTTTTTATAATGGTTTTTACTGCTACAATTGTGAGTCAGAAGTGCAGAGGGTGAGCCGGCCCCTGGCCCAGAGTTGCTCAATCCCCGCCCCCAGGCTGCTTCACATCCCATGGCGGAGCCACCTTTCATCTCCGTGGACTTCTTTCTCCCGGCACCCACAG
Seq C2 exon
GCACACGTCCAGAAGGTGTTGTTGGCTCTCACCGTGCTGGCTGTCCCTGTGCTCTTCTTGGGAAAGCCGCTCTTTCTGCTGTGGCTGCACAATGGGCGCAGTTGCTTCGGCGTGAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704:ENSRNOT00000083401:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(15.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAGTTCAACATCTACCTGGT
R:
GCTCACGCCGAAGCAACT
Band lengths:
320-1861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]