RnoINT0024201 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70292565-70294788:+
Coord C1 exon
chr7:70292565-70292658
Coord A exon
chr7:70292659-70294703
Coord C2 exon
chr7:70294704-70294788
Length
2045 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGGCTTTGTGACATTTCAGTTC
3' ss Score
5.75
Exon sequences
Seq C1 exon
GAAACAGGCTTCAGGACCCGAGGTCGCCTGCTTCGGGACCGCTCGTCAGTACTTCACCTGCTGCTTTGCTGGGAAAGGGAGAACAGAGGGTCAG
Seq A exon
GTAAGGTCTACTGTGTGTGTCCTTGTCAGCTGAAGGTGAGGGGACAGGGGTCACGCCTTCCCTGGATTTTGTCTTCTGGGATGAAGCTTTGAAAAGATTGGTCCAGGAGCTTGTGACCAGCTTTGCAAACCACATTGAAGGAGAACCTGTAGAGCCCACTGAGTAAGTTGGGCACATTCTTGAGGCTCAGGGATTTGGAGCAACAAGACCCCTCTCATCTGTCCCTCTGTGGAGCAAGAGAAGTTTAAACCCCAGTAGGTTACAAGGCTTGTAAGCTGGAATCTCCAAACCACACCCTGTGCCCGTGATCTTTGCAGCGCTCAGGACCCCAAAGTGCTGATGATTAGGACTTGGGAAAACAGACAGACCCAGCTTGGGGGAGTTTTAATGTGGATGGATGGACCTGGGCTTTCCGGGTGTGGCATTTCCTGAATCTTGGGTCTCTAATCAGCTCGTGGATTCTGAAGTTCCATGGGGGACATGGGACCCAGTAGGGAGGGGAGGGACTCAGATTCACTATGCAAACGTGGTAGGTTACCAATAACCAGAGACACGTTGGCTCTAGTCCCCTTTCCTGAGCAGGTCATGAATTAGACTTAAAAGCGAGAAAACTAGCCCTGTGGGAAACCTGAACGTTTCCTGGTGATTCTGAGCTGTGCAGGGTGGGGCCGCACAAGTTATCAAATTAAATACTCAAACATTGGCAGTTCCGCGCCACGGCTCTGCTTTAGTCGACTGCCAGCAGCACACAAAGGGACCCGGCTTTTTGGGGGTAATGGTGAATCCTCTCCAAACCTGGTTTTATCCATCAAGGCTCAAGAAAAGAATGGTCCATGGAGTCAGACTCTCTCTTTTGCCAGGGATGGGGCCATGCTGGGGATGACAAATGTCTACCATTTGAAGCCCCATATAGCACCAAGTTATCAAATGTCTGCACAACCTTCCCCCAGGCGATTTTGTTTTTCAATCTCCCATAAATCCATCCATCCCATCCTTGGCTTTGAGTCTTAGGAGAAACCAACCTAGTGATCACCCAGTGTACGGTGAGAACGCAGCCTCCCTGAGGGTAGGACTTGGGAGGAGGCACGTTCACAGAGATATTGGGTAACTTTGTGTGTTGACCCCAGCCAAGTGCTGACTGTAAACAGTGTGAGGACCCCATGGTCATCTTACTACTTCCCTCCCTGGCCTTATTCAGCCCTGTGGGTGCTGGAAACCTCTAAGCTCACTGAGGATGAGCCTTCTGGGGAAGTTGGGGTCTGTGGGCCACACCCATTTTCCCTAGGCACAGGCGTTATCCTTTCTTCTGCAGGCCCACATACTGGTAAACAGTCATGATAAAGGGTTGTTACTGTAAAAAAAGAAAAAAGAAAAATAAAAAAAAGGGTTGCTATTGTTCTAGGCTTACAAAGTTAGGAAGGACAGCTGAAAGCAGGCACAGAGGGAGGAGGGAGGACAAGATCTTGCCAGGGATCTGGGAAGGGGCGTTCAAGGATTGGGAGAAGGGGCCTCATTGGGAAATACTTTTTCTGCCTGGATTTCCTCTGTACGAGCCACTGAAGGCTAGCAGCGAGAAAGCGTGGCTAAAATGCAGACGTTTAAGGTTGGGTATGAAAATAAAAGGTATGGACCTCGGGCTGGTGGTGGACGCCTGTAAGGCAGGCACTCAGGCAGCTCAGGCAGCTAAGGCAGAAAGAGTTTGTGACCAGCCCAGGCTATGTGGGTAGATCCTATGCTGATAAAATAAAACAAAACATGCCGGGCAGTGGTGGTGCACACCTTTTGTTCCAGATCTTGGGAGACAGAGGCAGGTGGGTCTCTGAGTTCAAGGCCAGTCTGGTCCACAGAATGAGTTCCATCATGGCCAGGGTGTCAGAGACCCTCCCTTGAAAAGATTAAAATGAAACAAAACCAAAAACTCACTGTGTACGGTGGGTCATACGGCGGATGGACATATGGCGTGACTGCTGATGAGACAGGGAAGTGTCATAGGAGAAGCAATGGTTCACTGTGAGGAGCATCACCCTGGCTTTGTGACATTTCAG
Seq C2 exon
TTCCAGGAAGACAGACACTATGTCTCTGAGCAGTGCCTTCAGGACTGTGACCAATGACCCCGGGATTATCACGTGGAGAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]