RnoINT0024916 @ rn6
Intron Retention
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55892937-55894615:+
Coord C1 exon
chr3:55892937-55893002
Coord A exon
chr3:55893003-55894565
Coord C2 exon
chr3:55894566-55894615
Length
1563 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTTGTGTGTTTGTATTTTAGCTA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GCAGACTCTTAGTCACAAACTTAAGGATCATCTGGCATTCCTTGGCATTACCCAGAGTCAATCTTT
Seq A exon
GTAAGTTCTTTCTTTATTTTTTAAAGATTTATTTATTTTTATATAAAGTACACTGTCGCTCTCTTCAGACATACCAGAAGAGGGCATCAGATCTCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGTATCTTTCTTAGATAAGATGCTAAAGAAAAAATTCCTTTTTCAAGAAAGTTGGATGGTAGATTTTTTTTATTTAAAACAAACAAACAAACACAACAAACAAACAAATCTAACTGCTGGGGACAGAACTCAGTGGTAGAGCATAAGGCCTGGATTTAATCCCCAGTAATGTGAAAGAACAGGAACAGTTTTCTTTCAAGCTGTCCCATGAAGAATGAGGAAATATGAGATCATTCTTTAAGAAAACCTTGAGAAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCATTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATGTACATTAAATAAATAAATCTTAAAAAAAAAAACTTGAGAAGACCAATCACAGACTATTTCAAAATGCAAAAGAAATGATCCATTCTCTTTTTTTTAGTCGGTCAGTTTTGTATCTTGGGCATATGTAGGATCAGTGCTTTTAAACAGGATGGTTTTTGTCTTTAAATTTTTATTATTATTATTATTATTATTATTATTATTATTATTTTGTGTGTGTGTTTGATGTGTCTGGGTGGGGTTGATATGCCAAGGGACAACCATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTTCTCTCCATCCATCATGGGTTCTGGAGATGAGGTTCAGGTCTCCAGGCTTATGTAGGGGGCCTTACCTGCCTAGCCTTCCCTGCTGCCTTGGGTTCCAGTTTTCATTGTGTTTAAAAACATGCCATATAGTTTGTTGCCTTTATTTTTTTTTAAGTGTGACAAATTTAGCCATATTTTTCTTTTTTTCTTTTCTTTTTTGAGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGACCTTGCGCTTGCTAGGCAAACGCTCAACCACTGAGCTAAATCCCTGACATAATATTCCACTGACATAATGGTGGAAATGGTTTTGTTTTGTTGGTAGATGGTTTTGTATGGGTTTTACACATTTTCTTTTCCTGTGTTGAGAATAGTTTTATTTCATCAAAGAAGCACAACTGACCCTCAATTTCTGATGCTCCTGCCTCCGTCCTCTGAGCACTAGGGTTAGAAGTGCGTATCCCTGTGCTCTGTTTATCCAGTGCCGAGGATCGAGCTCAGGTCTCCATGGTGCTAAGGAAGCACGCTACCCTCTGAGCCCCATTCCTAGCCTCAGTTTGTATCTACTTCATAAAAAACTTAAAAAGTTGTGTTTCAGCCCATGTTCGATTTGTAAAACATCTGGGATTTGAATTTATTTTTACAGTACTGTTTCTCACTTTGTGACCTCATGCTCCGTGTTTCCTTTGTGTGTTTGTATTTTAG
Seq C2 exon
CTATTGGCTACAACTGCATATTGAATATTACAACAAGAACTGCCAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127:ENSRNOT00000009396:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(11.9=100)
A:
NA
C2:
PF072896=DUF1448=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]