RnoINT0024919 @ rn6
Intron Retention
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55895975-55898385:+
Coord C1 exon
chr3:55895975-55896110
Coord A exon
chr3:55896111-55898289
Coord C2 exon
chr3:55898290-55898385
Length
2179 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
CCTCTGTCTTTCTTCTGCAGGGG
3' ss Score
12.48
Exon sequences
Seq C1 exon
AGCCTATGAAACATCTAAAATGTACCGTGATTTTAAGCTGAGAAGTGCAGTCATTCAGAACAAGCAGCTGAGGTTATTACCACAGGAACATGTGTATGATAAGATCAATGGTGTGTGGAATTTATCCAGCGACCAG
Seq A exon
GTATCTGTCGTGTAGAGCAACTAGCCTTTAGGGCTGCTCTAACAGCTGTTTCCTTCTGTCATTGGGGTTGTGTAATCATGAGCGTTAGCATTGGCGATCTGGAGAAGTTAGCATTACAGCTTTAGACATGGAGCAATATTCTCCCTTTTTTGCCTTCTCATAGTTTTCCTTCTGAGTTGCAGGGTTTACAAGCATGCACCTAGCCCAATCATTCATTCATCCTGTGTGTGTGCTTAGCTTTGAGACAGGGTCTTATGTAATCCAAGCTGCCCAGGAACTCAACTTTCATCTGAGTGCGGGGCTCACAGAACTCACTCAGGCAGCTCACAGCCACTTGTGACACCAGCTCCAGGGTGTCCGATGACTTGGCCTCCAAGAGCACTAACACTCCCATGTGCTTAACCGCACAGAGACACAGATACGTAATAAGAATAGGTGTGCGGTGGTGGCATACTGTGTAAGCCCAGCACTCGGGAAGCAGAGGCAGGCAGATCTTTGTATTTAAAGCCCGCATGGTCTTACATAGTGAGTTCCAGGACAGCCAGGGCTACAAAATGAGACCCTGTCTCAAAATAAAAAAATAAATATTTTAAATGTTTCATTGTTTTTGTCGGTAGTGGTGTTAGTTTTATTCTGTGTATAGGTCTCTTGCCTGTGTGCATATCTTGTGCACCCAACATGTGCATGGTGCCCCATAGAGGCAGAACAGAGGTCATTGGTTCCCTTGGAACTGGAAGCCGCAGGTTGTTGTGAAGGCTGCCTTCTGAGTGCTAGGAACTGAACCTGTTTTGTCCACTGAAAGAGCAACCAGCGTCCTCTAAACCACTGAACCGTCTCTCCAGCCCAGGTTCAGTTGTTGGAAGGAAGTCTCAAAACGTAGAAGCCGAGGCTTGGCTCTTAAACTCTGTCCTCGACTGCCTCACCTCCCAAGCCTGAGATTATGGACTGAATCACCACATCTGACTGTATGTTTTGATCTAGTCAGTATTGAAGGGTCATCAAATATATCTGAGATGGAATGGATGGATGGGTGGGGTGGGTGGATGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGTGTGGATGGGTGGGTGGATGGACGGACGGACGGACGGACGGGACGACGGACGGATGGATGGGTGGGGTGGGATGGTGGGTGGATGGGTGGGTGGTGGGTGAGTGAGTGGTGGGTGGGTGGGTGGGTGGATGGATGGATGGTTAAAGAAAGTATAAGGTTTTACTCTCGGGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTAGCATGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAGAAAAGAAAAAAAAAAAAAAAGGTTTTACTCTCAGTTGCCATAACTCCTTTGCTCAGGCATATCACGAGTTTTGAATGATAATTATAGAAAGATATAATACTTATAACATGCTATGTGCCAGGCTCTCTACTAAAGTCTTAAAAAGCTGGGGGTGGGGAGATAGATCATTTATTCAAATCCCCATTTTACATTTTTACAAAATACACCAAGAAGAATTCTGTGGGTCAGTGAATGGCTCAATGACAGCCCAAGTTTGATTCCTGGATCCCCTAAGGTGGCCAGAGAGCTGTTCTCTGACCTCCACTCATGCATTTGCATGCATGTACACACACACACACACACACACACACACACACACACACACACTTTTTAACTGTGCCCACAGACAAACTCTCTGACTTTAATGTTTCACTGTTCTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTAGTATATATAAGTACACTGTCACTCTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTTAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTTCACTGTTCTAATGTCCTGCTGCTTAATGGTCCCAGGCCCAGGCATTCTGTCATCCGGTTGTGCTAGGGTGTAAACAGTAGAATCACTGCTACTCCATAACGCTAAATTCTTGTGTTAATGTGCTGCTGAATGATGAGGATGATTCTGGGTCCCAGGTAACAAAGACTAGGGGTGCTCACAAGCAACCATTGATTGACCTCTGTCTTTCTTCTGCAG
Seq C2 exon
GGGAATTTAGGAACTTTTTTTATTACCAATGTGAGAATTGTGTGGCATGCAAATATGAATGACAGTTTTAATGTCAGCATACCATACCTGCAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127:ENSRNOT00000009396:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(24.3=100),PF036948=Erg28=FE(61.6=100)
A:
NA
C2:
PF072896=DUF1448=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]