RnoINT0026408 @ rn6
Intron Retention
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14228764-14230346:-
Coord C1 exon
chr7:14229962-14230346
Coord A exon
chr7:14229355-14229961
Coord C2 exon
chr7:14228764-14229354
Length
607 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGTTTGTTTTTAATTCCAGCTT
3' ss Score
7.98
Exon sequences
Seq C1 exon
CATCATCACCATCACCACCCACAGATGCAGCCAGCCCCAGCTCCTGTGCCCCAGCAGCCGCCGCCACCTCCACAGCAGCCTCCTCCACCCCCACCTCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCCACCCCCACCACCTCCGCCCTCCATGCCACAGCAGACTGCCCCAGCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCCCAGGTACCCGTCCTGGAACCACAGCTACCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCTGCCGCAGCCAGAGCTGCCTCCTCACCTGCCCCAGCCACCGGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCTCCTCCAG
Seq A exon
GTGAGCCATGGCTATCTCTCCCTTTGTCACCTTGTTCTACTGCAGCGTGACCAGTTACTCTGAGCAGCCTGCTAGCTTCAGTGATTGATTGTCAGTTGCTTCTCTGGGACATGACTGGTGTGTCAGGAGATTGTAGTTTAGTTCTTTGGGGCCAAGCATTATGTTAGATCAGAAAAAATTGGATCTGTCTGCAGCCCTTGGTTTAGGGCATGGAGGAGACGTACTCATTCTCATAATTAATCCTGTGGGACTTGGGCAACACGGATGGGAGGGAGAGGGGAGAGAGAGAGAAACAGGGATGCTTACCCGCTTGGCAAGCTAATGAAAGTCTATGAGCAGATAGCAAAGACCTGCAGTGAGGCCTGAAGGTCTGCAGAAAACAAGAGGAAAGAGCAGGGACACAGAATCTAGGGAAGATGACAAGGGATCTGCTCCTGTGGGCTTTCTGAAAGCTGTCTTTATTGTACTGCTGTAGAAGCTGATAGAGTGGAGGAAGAAGAGAAGGTGGTCGCTATAGTCTAGACAAGGTCAGGGTAGAACAAAAAGCCAGTCCAGAATCATAAAGTAACTAAAGCCTCACGTCAGTTTTGTTTGTTTTTAATTCCAG
Seq C2 exon
CTTTGCACAATGCGCTGCCCCAACAACCATCTCGGCCCAGCAACCGAGCTGCTGCTCTGCCCCCAAAGCCTGCCCGACCCCCAGCTGTGTCCCCTGCCTTGGCCCAGCCCCCCCTGCTCCCACAGCCACCTATGGCTCAGCCCCCCCAAGTGCTGCTGGAGGATGAAGAGCCGCCTGCCCCACCCCTCACCTCCATGCAGATGCAGTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACCACCTTTGCCGCCTCCACCCCACCCTTCTGTGCAGCAACAGCAGCTCCAGCAGCAGCCACCACCACCCCCACCTCCTCAGCCACAGCCACCACCCCAGCAACAACACCAGCCCCCACCACGACCAGTTCACTTGCCATCCATGCCCTTCTCTGCTCACATTCAGCAGCCCCCACCACCCACAGGACAGCAACCCACCCACCCACCCCCAGGACAGCAGCCACCCCCACCACAGCCTGCCAAGCCTCAGCAAGTCATCCAGCATCACCCTTCACCCCGGCACCACAAGTCAGACCCCTACTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770:ENSRNOT00000008963:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCACCCAGCCCATCTTG
R:
TCTGCAGCTGCTGTAGGTACA
Band lengths:
346-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]