RnoINT0029378 @ rn6
Intron Retention
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3805344-3806713:-
Coord C1 exon
chr3:3806624-3806713
Coord A exon
chr3:3805540-3806623
Coord C2 exon
chr3:3805344-3805539
Length
1084 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCTCCCCAACTGTACCACAGCCT
3' ss Score
5.3
Exon sequences
Seq C1 exon
GAGCATCTCCACACTCCCAGAGGCTCGCTCCTGGAGTGCCCATAGCCCAGGCAGCATCCAGCTGGCAGGTGGCTCCCACAGGACCCTGAG
Seq A exon
GTAAGTTCACCTTCCTGGAGGTGGGTGGAAGCCTGTGGTGAGTCTGCTGGGGACCCTGGAGCAGCAGTACCTACAGGCAGGTGGCCTCCTCCACCCTCACCCTTCATTTGATTAACCCTGGCCATGGCAGTATAGTCCTCCAGTGCTGGGCCATGTGGCTGTGGGGCTGGAATGGCAGGCAGTGGGCCCAAGGTTTAGAGAAATGTCTGTCCACTGAAGCCACTCACAAAGGCTTCACTTGTCCACATGCAGCTCCACACGAGTAAGCCCCTATGTTCAACTGGCCTGACTGATCCCCATCATGTGGCCAGAGGCCAGGCCTCATCCGGCAGCAGAAAAGCACAGGACTTGCCTAGCACCTGAAAAACTGGAGGGAAGCCGCAGCAGACGTCCAGTGTACCCCAGCCTAGCAGGGAGGCAGGCATGCTCCCACGGCCAACCCTTACTTGCCCTCCCAGAATAGCACCATGCCACAGGCTGTTGCATCACTGGCTACAACGGAAGGCCTGAAGGACTCGGAGCCTGTCAGGGAATGAGGAAGTCACACATAGGCCTGGCCCCCTGGCAGAGTGAGAAAGCCTCCCACCAACCTGACCCTCTTAGTCCCAATCTGGAGACTGGCCAGCCAGGGTCCACGCCACCCAGGGAGGTACTATGTAGGATGGCCAGTAGGGGCAAAAGCTCCCACCTTGAGGGTGTGCCAGGGCACTCCAGGGTAGAGGGCAGAAGCTAGAGCAGGCCTGTTGTACAAGGGCTATTCTCTTAGACCCCCAACCCATCCCTTCCCTGCATATCCACATGACTCAACGAAAGCTTGGGGTGACAGCAGCTTGGGGAAGGTGGGTTTAACAGGTGGCCTGAGGAGGGGCTTGCCTATGGACCTCTGCTTCCCCTCAGAAACTCTCCATGGAGCTGAGGAGATGAAACTGAGCCGTATATTTCCCTAGACTGAGTCCCTTCTGACCCTGCCCAAAGCCCTGCCCTGGCACTCCCAGGCCTGGGTCCTGTCAGGCTGACTGCGCCAGGCCCAGCAGGGAACAGAAGGTGGGCACTTCCTCAGCTGCTCTCCCCAACTGTACCACAG
Seq C2 exon
CCTACAGAGGACATGTCAGACTATGAAAATGACGACGAGTGCTGGAGTGCCCTGGAGAGCTTCCGGGTGAAGCTAATCTCTGTCATTGACCCCTCACGAATCACACCCTATCTGCGCCAGTGCAAAGTCCTGAACCCCGATGATGAGGAGCAGGTGCTCAGTGACCCCAACCTGGTCATCCGCAAGCGGAAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470:ENSRNOT00000091484:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061916=CARD=PU(58.6=82.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATCTCCACACTCCCAGA
R:
CCACTTTCCGCTTGCGGAT
Band lengths:
286-1370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]