RnoINT0030553 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23006604-23009977:-
Coord C1 exon
chr8:23009900-23009977
Coord A exon
chr8:23006775-23009899
Coord C2 exon
chr8:23006604-23006774
Length
3125 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
3' ss Seq
TTCTCCGTCCTCCCCTACAGCAG
3' ss Score
10.39
Exon sequences
Seq C1 exon
GGAGACTCCAAAGTGGTGCAGGCAATCATTCAGGAATGGAGGTCAGAGAAGCCGTACCTGAAGAACAGGACATGTGAG
Seq A exon
GTTAGCCTGGCCACCACCATCCCGTCCATCAGTCACCATCCTCATACGTCCATCACTTCCTCCACGCTGGACTCCAGCTTTCCCGAGTTGCCTCTCTAGGCTTTCTCCTTACCCACTGCTGATCATTTATTCCCTCGATGAAAAACTTAACATTTATTTTCATATATGCAGTCTCAGGTGCCTCAGCACATGTGTGGAGGTCAAACAAAAATTTTGGGAGTTGGTTCTCCCTACCACGTGAGTTTTGGTGAGTGAACTCAGACCATCAGGCTTAGCCACAAGCACCTCTACCCACTGAGCCATCCTGTTGATCCATCAGTAAAATCTTTATTAGATGTAAACCTTGTGGTGCTAATGTTGATGACCTCACAGTGATGAACCAGAGCTTTCCCAGAAAGGGCGTGTCCTAGTGGAAGACTGACATGTGTTTAGTGTAGGGTGAGTTCCTCTGTTCTCACCACAGAGAGGCTGAGCAGAGAGGAGCAGGAATTCACTGTGCAGCCTAGGCCACATAGTAAGACCTGAAGACCAGGGTTGTAGGAGATCTCAGTCAGGAGAGATGGCTCAGTAGTTAATAGAATGTATTGCTCTTGCAGAGGACCCAAGTTAGATTTGGGCTACTTGAGTAGCCACTTGAGGCTACTCACGACCGGATATAATTCTAGCTCCTAATCAAATGACACTGCATACATTTGCACATACCCTCATTCGTGCACATAATTAAATATGGAAATACATTTTTTTCCTTTTCTTTTTTTCGGAGCTGGGACCAAAAGCCTTGCACTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCTCCAATCCCGGAAATACATTTTTTAAAAAGAGAGTGAGGCTGGGTGGTGGTGATGCATACCTTTAATCCCAGCACTCAGGAGGCAGAGTCAGGTGGATCTCTATGAGTTTGAGGCCAGCCTGGTCAACAGAGAAAGTTCCAAGACAGCCACTGCTACACAGAGAAACCTTGTCTTAAAAAAAAAAAAAAAAAAAGCTAAAACTAGGAGATTGAAAAATATATACACCGCCAAGGCACTGTTTCTCCAGTTCTGATCAGCTCTTGCATCAGGGGTCTGATCAGACCTGTGTCTGTCTCCCTCCTAAGAATACCAGAGACCCCACCTGGACGGCCTTCCTGATGGACGCTTTTTTCCACCTGGACAGCCTTCCACCAGGACAGTCTCCCACCTGGATGGTCTCCCACCTGGACTGGCTTCCTGTAGCTACCCCCACCCACCCACCCCCGTCTCCAGGTGGCCAGACAGGAGCTGCAGATTAGTGTTGCCTCCCCGGACATTGACAGAGCAGCCAAGTATATTTGTGTCGAGGCCACCGCAGTTGGTGTGGCCAGATGAGGGCCTGGCATTGCAGTGGTGTTCGGTAAATTGGTTATAGGTGATTCTAGGAACCTACCTCTCATGCAGTAGGTTTTCTCCATGCCATTCTGGATTTTCTCCATCTGAGGCCACAGGGTTTTTCTCTTTGGTGTTGCCTTGCCCTGTGCCATCACCCTGTGGCCTCATACTAATGCCAATAATGCATCAGCTAAGCTTTATGAGTGAGAGGGAGAGAAGAGAGAGACAGAGAGAGAGGAAAGAAAGAAAAGGAAAGGAAACAAAAAAGAAAAGGGATACAAAACAAAACAAAACTCCAGGGCTGGAGCAATGGCTCAGTGGTTTAGAGCAAAGGACCTGGGTTTGGTTCCCAGCACCCACATGGCTGCTCACAGATGTCTGTAACCCCAGCTGCTTGGGATCCAATGCCCTCTTCTGACATCCTGGCACAGATACACATGCAGACAAAACACCATTACACATAAAATTAAAGATGAAGTAAAAGTGTAAGTAATGTTATAGGAGATGAGCTAGGGACCTGAGGAGGCGGCTCAGTCAGTGACGTGCTTGCTGTGCAAACATGAGACCCTGAGCCTGATTTCCAGAACCTATATAAAAATCTGAGTGTGGGAGCTGGAGAGATGGCTTAAGGGCATTGACTACTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTAGCAACTATCTTAGTGGTTATGCCCTCTTCTGGCATAAAGGCATATATGCAGTCAGAGCGCACATACACACAAATAAATTAATTAATCAATTAATTAATTAAAGTCAGGCATGGTGCATTTGCCTTTAATTCCAGCAGAGGCAGATGGATCTCTGAGTTCCAGGCCAGCCAGGTCTACATAGTGAGTTCCAAGACAGGGTAACACAGAAAAACCCTGTCTTGAAAAACAAAAAACAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTACAGAAGGAAAAAAAACAAAAAACAAAAAACAAAAAACAAAACAAACAGAATTCTGATCGCGAGCTGCAGAGATGGCCAAACAGGTAAAAGTGCTTTTTGCCGAGTCTAGTGTCAACCTCTGAGGCCCAGATAGTGGAAGAACCGATTCCCTCCCATAGTTCTCCTCTGACCTCCACATGTGCCCCCAGAAACATGGAAAGGCATGTTCTGACCTCTGTGTACTCAGGTCCTGGAGCAGGTGCACGTGCGCAGAGAGAGAGACTGAAGGAGTGGCTGAGACAGTGGAGGGTTTTCCTAGCACACAGCCTGAAACCCCGCTGCTCTCCAGGGCCTCAGAAAATGGGGGTTCGATGGTGTACTGATATGATCCCAACACCCAGAAAGTCTATGCAGAAAGATCAGAAGTTCAAATTTATCTCTGGCTGCACACAAAGTTCAAAGCCAATCTAGACCTTATGAGACCATGTCTTGAAAATATAAATAAATAAATATAAACAAATAAATAAATAAATGTAAAAGAGATCTGGGAATAGCTGCACACACAAGGCTCAAATTTTCCTATGGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACATACGGATAGAAAAAAGAAAAGCATCAGATGCCAAGGGTTCTGGAAAGCAGGTAGGAGACCAGAGAGACAAGGGCTTCCAGGAGAACTCAAGGACTTGGGAGAGCAAGCTGAGGCTCTGTTCTCCGTCCTCCCCTACAG
Seq C2 exon
CAGGCCCTGGAGCACCTGGAGCACCAGTTGAGGGAGAAGATGAACCAGCTGAATGCCTTACGACACCAGGTAATCCTTCGGCAGAAACGGCTGGAGGAACTGAGGCTGCAGCACAGCCTGCGGCAGCTGGAGATGGCAGAGATCCAAGACAGCAACACAGAGGCCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.316
Domain overlap (PFAM):
C1:
PF079166=TraG_N=FE(14.9=100)
A:
NA
C2:
PF079166=TraG_N=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]