RnoINT0032285 @ rn6
Intron Retention
Gene
ENSRNOG00000056783 | Cd69
Description
Cd69 molecule [Source:RGD Symbol;Acc:61318]
Coordinates
chr4:163043419-163044017:-
Coord C1 exon
chr4:163043818-163044017
Coord A exon
chr4:163043523-163043817
Coord C2 exon
chr4:163043419-163043522
Length
295 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TAACCCCATTGTTCTTTAAGGCG
3' ss Score
5.88
Exon sequences
Seq C1 exon
TGGGCAAGTACAATTGTCCGGGCTTCTATGAGAATCTGGAGTCATTTGACCACCATGCTGCTTCCTGCAAGAATGAGTGGTTTTCATACAACGGGAAATGTTACTTTTTCTCCACCACAACCAAGACTTGGGCCTTGGCCCAAAAATCTTGTTCTGAAGATGACGCTACCCTTGCTGTTATTGATTCGGAAAAGGACATG
Seq A exon
GTAAGATTCACAACCGATCCCATCAAATGCTGTTGTTCTATTTAGATCTTCTGTGGTTCCAATGTATTCTAAGTGAACACTGGGCACCTCTCTCACGTGCAGGGAAACTTAGTCATGGGTGGCGGGGGCGCTATGTGAACAATCTAAACGGTCAGAATGAGAGTCTGCTATTCCCAGTGTGGTTTGATTGCTTAGTTTCAAAGACCAACGATTCCGATGGGCTGATGCCAGATGCAATGACCAGCTTAGCCATGATGCTCCGTCATGTTGTAACCTAACCCCATTGTTCTTTAAG
Seq C2 exon
GCGTTTCTGAAGCGATATGCTGGTGGACTGAAACACTGGATTGGGCTGAGAAACGAAGCTAGTCAGACATGGAAATGGGCAAATGGCAAAGAATTTAACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056783:ENSRNOT00000091644:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151761=LRR19-TM=PD(61.0=91.0),PF0005916=Lectin_C=PU(28.4=40.3)
A:
NA
C2:
PF0005916=Lectin_C=FE(35.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAAGTACAATTGTCCGGG
R:
TTCTTTGCCATTTGCCCATTTCC
Band lengths:
292-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]