RnoINT0034608 @ rn6
Intron Retention
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73620570-73622224:-
Coord C1 exon
chr13:73622139-73622224
Coord A exon
chr13:73620617-73622138
Coord C2 exon
chr13:73620570-73620616
Length
1522 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TATATGTCGCTTTTTCTTAGTAG
3' ss Score
3.88
Exon sequences
Seq C1 exon
GTAAATTGGCAAGATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCCAATCCAAGGAACTCTCAAAGCAAGGAGACTGTTCAAG
Seq A exon
GTAGGATTCTTTCTTTTCTTAAAGACTGAACTTAGTCTCATTCTTTTTTTTTTTTTTTTTTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCTGAACTTAGTCTCATTCTAAGGTCCTATAATATATTAAATTTTGGGCTAATCAATAGATGAAATTTACCCATTATCTTTTGATTTATAAAACAAAACAGTGGATTATGCTGGAGAGGTGGTTCAGTAGTTAAGAGAATGCTTACTGCTCTTGCAGAGGACCTGTGCTCAGTTCCCAGCACCTCCTATGTTGTACAGCTTGTAAGTGCTGATAACGTCAGCTTCAGTGGTCACTTGCATGAACACCTACACGTACACAAACGCACACGTGCACGCACATACATACACACACGCATACACATACACACACAGACACATAACCGTTTTTTAAAAAGTGGATAGATAATTAAATTTTAGTTTCTAGTATACAAGTTTCCTTTAAAAGTGAATTAGTTGAGCCAGATGTGGTCATGCATTACTGTAATCCCAGAACTCAAAAGGTTGAGGCAGGGGGATCATGAGATTAAGGCCAGCTTCTACATATGAACACAGTATGAACTCACCTCTCCTCAAAAATTATATATTCAAAATTAGTTTTTCCTTTTCAGAAATCCTGACCTTACTGTCAGTATCTATAGTCCATATGTAATAAGTTACAGTTTCGTTAGAGATACTTTAAGGTATGATATTTTAAAAGGAAAACTGACAAAGAAGTAGGTCTGGAAGCTGATTCCCGTGTGTGAGGGAACTAGAAATCAAGCCATATGGGGAGTCTATGGAGGAAATGGAAATTCTTATTCTGGAAGAGGATAACTCATGGGAAATAATGCAGCCTCAAATTAGTTGGAAGACTGTTACTTGAAAGACTAAATAGATTTCTTTTGTACTAGTAAGTTGATATATGGAATGGTTTCAAGGATATTCTTTCACATTTAAAATGTGGTCTAAGATAACGCAGTTTTATATTTGGTTGGGATATACTGGGGGATAACTAAAATCCCAGCACTCAGGGTGCTCAGGCAGCAAGATTCTAAATTGGAGGTCGGCCTAGGCTTTATAGCAAGACTCTACCTTATTTACCATATTTGTTCATTCTCATTCTCTCTCTCTCTCTCCTCTCTCCTCCCTCCTCCTTCCCTCCCTCCCTCCCTCCTTTCCGCCCTCCTCCCTTCCTCCCTCCTCCCTCCATCCCTCCTCCCTTCTCTTCTCTCTCTCTTCCTCTGTCACCCCCCGTCTTGGGAGGTGTTCAGACCATTGCAGTTAGCTGAGGATACTTCTTACTCTTACACATTTCTTGAGAAGCCCGATCTAGCATTATAAATGCATTGGATAAGGAATAGCTCCAGTGGGGTAGTTCTCAAACCCTTGGGAGCATATGAAACTTTATAGCTTAAGTTTACTTCAGAACTCTGACTCTATTATATGTCGCTTTTTCTTAG
Seq C2 exon
TAGATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882:ENSRNOT00000005195:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.489
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]