RnoINT0034894 @ rn6
Intron Retention
Gene
ENSRNOG00000052990 | Cers5
Description
ceramide synthase 5 [Source:RGD Symbol;Acc:1311597]
Coordinates
chr7:141392199-141392923:-
Coord C1 exon
chr7:141392873-141392923
Coord A exon
chr7:141392292-141392872
Coord C2 exon
chr7:141392199-141392291
Length
581 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACTGCTCCTTTCTCTTCCAGCCA
3' ss Score
10.89
Exon sequences
Seq C1 exon
ATGCCTTGGCTCTGGGATACCCGACAGTGCTGGTACAACTATCCATATCAG
Seq A exon
GTAGGATCTCAGTCGTTTCAAGACTTTGTATTTGTGTAAGGTAAGGTGGGTGACAGTGCATATCAGTCTAGGACAGGTAACGCCAGCAGTGTTCCCTGACAGTCCTTTGAGGCACAGATTCAAGGCATCTATATCCAGGGCGTAGAGCAGAAACACCAGTGAGCTTTTTGTTCAGGTCCCACTTCTGCATGGCCCTGCTGTACTGGGAGGAAACGCAGTTTTCTGGTGCTAATAGGTCCTTGCTGACTCGGATTCAGTCATTGTACATTGGGAGCTATTAGAATCCTCATGGGGCATCTTGATTAGTCTATACTTTGAAAGTGTCAGGGAAGTGAAAAGTTGTGGAAGAAAAGAAGGCCTAAGGCCACTCTGCCCCTAATTCCAGACACAGTAGTCAGGGTGTGGTATGGGCTGTGTTAGCCTTACCTCATCTCTAAAAGATGAGAATGGAGAGGAGTTTACAAAGGTGCAAAGGGAAAAGGCTGATGTCTTACACCAATCCAGTCTTGGTGTCTTGGGAAACAGTGAAGAAGAAAGGGACTGGGAAGGCTCCGCTGACCAACTGCTCCTTTCTCTTCCAG
Seq C2 exon
CCACTCTCAAGAGAGCTCTATTACTACTATCTCACACAGCTGGCCTTCTACTGGTCCCTCGTGTTCTCTCAGTTTATAGATGTTAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052990:ENSRNOT00000080109:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]