RnoINT0036166 @ rn6
Intron Retention
Gene
ENSRNOG00000017939 | Chn1
Description
chimerin 1 [Source:RGD Symbol;Acc:620139]
Coordinates
chr3:60515329-60518679:-
Coord C1 exon
chr3:60518542-60518679
Coord A exon
chr3:60515435-60518541
Coord C2 exon
chr3:60515329-60515434
Length
3107 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
ATCTCTCCTTGATGTTGTAGAAA
3' ss Score
8.12
Exon sequences
Seq C1 exon
ACGGTGAAAAGGCGGATATTTCTGTGAACATGTATGAGGACATCAACATTATCACTGGAGCGCTTAAACTGTACTTCAGGGATCTGCCAATTCCTCTCATCACCTACGATGCCTACCCCAAGTTCATAGAGTCTGCCA
Seq A exon
GTAAGTACGCGGACGCGGGAGCCCAACACCCCCAGCAAGCCGCCTCTTCTCAGTGCTTCCTGCAGCTCTCTCCATGGTCCATCCCTGTGCCCCAAGCACTTATGCGCTACACCCCAGACTGTCTCTGCCTTCTACCTTCAGAACTTTTTGTACTGTGCTGCTTTTCCAAAATGATCCTCCCGTACCAGTGCTGCTTGGCCTGAACCAACCTTTAGTAAGATAAGTCAAAGGCCCAAGCAAGGGCCTTCGGAGTTCACAGATGAGCACCAGCCCATTGTTGTGCTTCAGGGACACCGCTTCACATCATCAACAAGTTTGTTCTGCTTTGTTTTCAGAACTGGGAAGCAGAACTCAGGCCTCATTACCTCTCAGCCAAAGAAGTATTTGTTTTTTGTTTTGTTTGTTTGACTTTGGGGTTTTTTAAAATTCTAGTTAAGAAGAAAATGGCTCATTTGCAAAATTTTGTTTCAAAACTGATACCTGTAATTCATATCTTACCCTTCAAGAAGAGAAATCTTAAGAGTTTCTGGGTATTAGCATCATTTTTTTTAAAGATTGTCTATTTCTGTCTTTTTGCATCTATCTTTAAACAATATGTCTCTAGAAAGTTTGATGGGTAATACTTGAGTGCTTGGGAGAGAAGGGAGCTGCTATCCAGGGGAGAATCGGGTCAGTTTGGTGTCACATAGTCAGTGCATTTCAGCATGTTTCCAAGTAGAAACACTTGGAAATTTGGGGTTCCTTTTTCTGCAACAACAGGTTCACCCAGGTCTGCGTGTTCGTTTGTACATCCAAAAATCTCGGAGCTATCCCAGACCTCCTTCCACCACTCCTTGTTGTCTGCACCCCTACTTTAATCATTCCTTATTCTCCCTTTTTGCATACAGTCCCCATCAGGAAATCTTAAGAACTTTATCTTCAAAATAGACTCACAATAAAATCACACTGCTGCCATTTGCAAAATGTCTGCTATATCCCTGGGTTTTGCAGCACTGGAATGGTCTTTCTGCTATCATCTTGACCTTCTGTAGACCTTTGTGTACCACATGGCAGGTCAAGGGAAGACAACTATAGAAACAGAGCATTAGGGCCAGTGAGAGGACTCAGGGAGTAAAATGCAAAAGGCTGGCAACCTCCATTACCCATGGGATAGACAGCAGTGGCCTCCGTAGATGTGCCACTGCACTCACACATGCAGAAGTCACTAGCATGTGTAACTGAACATACAATTACATACCGTCTATAACCGCACTGTTCTCACCCTAAGTCTTCAGACTTGACACAGCTGACATGAGAAGAGCTCTGTGGCCACATCTGCTCCCCTCTCCCTCAGTCTCACAGGCATGCTCTGCTCTGGACCTGCACCCAGCTCAGCGGCGACCATCTTCCCCTCATCTCATTCCTTCAGGTGTCTGAGGAAGCTTTACTCAGGGCCTTTCGCTTGCTCTGAGGTTTTTCCTGACCACCATTTGAAATCCAACATGGCATCGTTTGGGCTGTCTCCCAGCACTTACCTCATTCTTGTGCACTGTAGCCTATGATGCTGGCCTCAGTGTTTGCAGTCAGCCCCTCTAGGAGCAAATAACTCTCCTGAGTTAGCACACAGTGCTCTCCACAACTTCCAACTGTCTCCACAACTGTCTCGGGCTTCTCCTGGCCAGGAGTAATTGTAGACTTTAAAAGGAAAAACCTGCTTTAATTTCCAAAGACATGGAGCTTCAAATTAATTGGCCCTATGCTAAGAGTTAGCTTTCTATAGTAAACAGAATTTCCTTCTCTTCCTTCTAGAAATCACATTACTGCATTCCAGTGTCTGAGAACATAGCTGTGTTATGAATAGATATAACCTTTAAAGTCCCCAAGGTTTGGAGTTCATGCATTATCTGGATGACAAAAGACAAAAAAACCCATATTTTTTTATTTTAAAGAAATGATCAGGGAATTGAGGAAGCTTTAGGCAAAGCTGTAGAATAGGCAGAGGTTCGTTTGAACTAACAGGCTTCGGTCACTGACCACATGTCTTCTGGCAATCATCGGGTCTGTTCAGCCGTGCTTTCCCTCAGCCTCTGTTCTGCACTGGCTTTTACTAGACCCAGTAGACATTGTCATTGAGCTGCACTGTTTCTTTGTTAGAAACCAGAGTTTCAGTCTTCTGTCTTAAGCACTGGATACAGGGCAGATGGAGTCTTCCCAGTATTTCAAGGCTGCCATGTTGATTAGGACTCAACAGTGTGAGGTCCTGTTGTGGTTGGCCTGAGACCAGCATTTAAGGCACTGCTGTAACCAGAGTGTGTGCGTGCTGTGGTGCTCTTCAGGAGCACAGAATTCCGACAGCATCAACTCCTTGTGTTACAGCCGTGATTGATAGATCGAGCAGAGCTCTTACAGTAAGTGGTTGGTGTGTAGGCCCTCAGTGCAGCTCTCAGATGTCTATATAGGGATCGTCCCTTCAGAAGAGCCCCCTTATCCCAAAATCCCACCATGGCACAGCATGCTTGCTTAGGGTTGCGTGCAGTGTGGTCTTCAGAGCGTATTCTGAGAAATGGAGAGTGCTCATGCTTTGAAGAGAGACTGCATTTTGTTATGTAACACCAAGGATAATACAACCAGCAAGTGTTAGATGATACATTTCTTGATTTAGAAGAACAAAGAGCTGTCATACTGCTCAGTGGTGGAGTGCTGACCAAGCATGTATGAGGCCTGGGGTCTGCCCATAATACTCCGAAGAAAAACAGTCATTAAAAATTATTAGTAAGACTTTGCAAGGGGCAGCGGGCTCCCTTGTATACTACAAAGGGATTTCTGAATATCCTGGGCACTATGTATGCTGCTCCCAGATGAACTCCATGGAGTGGAGTGGGTAAGGTTCTGTCCGTGTCTCCACCTGTGTCTGGATCCGTTAGAGCTGCATCCCGGTATCTAGTGTGTCCACTTTCCTCTAGACCTTCAAGGGAAATTGAACTGTGTTCCCACACTGAACTAGGGCAGCTTCTTTTTTTTTTGGCTGTGAGAAATCATTTTCACTAGCTTTGTAAAAGCATCACAGAAGATGATCCGTGACCATTCAGATCAGTTTTCTGCTAGAGCATCTCTCCTTGATGTTGTAG
Seq C2 exon
AAATTGTGGACCCTGATGAGCAACTGGAGACCCTTCATGAAGCACTGAGGTCTCTGCCGCCCGCCCACTGCGAGACGCTCCGGTACCTCATGGCACACCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017939:ENSRNOT00000068745:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(29.9=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]