RnoINT0036277 @ rn6
Intron Retention
Gene
ENSRNOG00000017424 | Chrna2
Description
cholinergic receptor nicotinic alpha 2 subunit [Source:RGD Symbol;Acc:621533]
Coordinates
chr15:42808897-42816336:+
Coord C1 exon
chr15:42808897-42809130
Coord A exon
chr15:42809131-42816193
Coord C2 exon
chr15:42816194-42816336
Length
7063 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TCCTCTCCTTGCTTATTCAGTTG
3' ss Score
8.81
Exon sequences
Seq C1 exon
ACTGAGCATTCTGTTGAACTCGGATCACCTATCTCCAGGAAGCTAGCCTGAATCCCTCATCCCAACAGTGCCTCCCAAACCTTGCAGGTTCTGTGTCTGGGCAACCATGAGCTGAAGCAACTGAGCTCTGTTCTGCACCTGTCACTGCTTCCGAGGGACCCTCGTCAGCCACCCCAGGTCTCCAGCCGGTTGGTTCTCTGCATCCCTTGAGGGGCCTGTCTTCTTCTATGACAA
Seq A exon
GTAAGTAAGCAAGTTGTTTGTTCCTGAGGCTTAGACTAGGAAGAGGTGCTCAGCACACTGGGGAGACTGGATGTGAGCTCAGAAGGAAGTTAGCAACTTGTGAGCACTGAGGAAATGGTCCTGTCAGAATGCTGGAAGTCACTTGCTCCTGGTTGACTCTGCTGGACCCGCTCAGAATGTTGTGAAAGCACCACGTCCCAGTGGCTGTGGAGACTTCTGTCTTGTAGTAGTGTTCACTTTTGTTTCCTAATAGCTCCCATCCTCTTGTTCATTTATCCCTTCATTCAGTATTCTACACACTTACATGAATTAGGCTAACAGACAGCGGTGGGCTTTACTGACATGAAAGTTAGCAAGTCCTCCATGGCTTGTGTGGATCGAGGTTGGAGTTAGACAAAGTACTGCCTCCCCTTCAAGATGGCACCCGACCTTGAGAGGTTACTCTCCTGTGGTGAGCAAGGCAGTGAGCAGAGTAGCCATGGAAGCAAAGTGTGAGCGCCCCATCCCTGGAGCATGTTAGTGAGTGTTACTTAGAAAGATGAAGAACTGGCATTGGCTTCATTTCCTCTAACAAGGGGGTCTCTTTGGTGGAGAACTGGGGTTGTCTGTGGGGTGCTGTGGCATGAGGGGTTTCTGGGGGCAAGAGGCAGTGCTTCAAGAAAGGGTAGAGTGTGTCTGATAAGTAAGCAGCTAAGGAGCAGCTGCAGTAGGAGGGTGGACAGGGTAGAGGGTCTGAGTTGTACCAGTTTCAGGGGATTCGCATCTAGGTAGATAAGCAAGGTAATAATACGTGCTGGAGCTGTGTGGGTGTGCTGGACCCTGGTGAGCATCACTCTAGTGGGAACGTTTACACATGAGCCCTTTACACGTGGAATAGTTTTTGTTTGTGTGTTTGTTTGTATAGATCTCATTTACCCAGTCTTAACAAATAATGGCATCACTCCACCAGCATTCTTATCCCAGAACTGCTAATCCTCTGATGCTGGGACTCAGAGTCCAGAGCCTTTCACTTTAAATCTTTGTAACTAGTGGTGGAAGGTTACTCTAATTACTGCTGATTACGTGGAACAATTTCTTCTTGAGTTTCCGGTGACAAATTAATGAAATGATCACAGTAGGCTAATTACAAAAGGTTGGAGACAACTCAAACACAGCCTCTGGAGCCAATGGCATCTCATTTGCACATTGCTCTAGACAGCCCTTAACAGACATCTTTTCCTGGATCTCTAAACAACACAACTTCAGCGTGCCTGCATCCCTGCCGTCGTTAATAAGAGGGAGTTAATCCTTGTGATAACACTCAGACCGTAACCTTGGAATCTGCAGCCATGGTATCAGTTAAAAGGAGGAGTCAGTGGCCTGCATGCAGAGGAACGTTCTAGAACTTTGGACCCATGAGCCAGCTTGGGTTGATGAACACCTTGTCTCTCACAGACCCCAGTCTTGACAGTGGCTCGGCAATAATGGCCAGCGTCTGTGTTTCTAAAATGCTGCCGTGTACTGGCTGAGTGAGCTCCTGCACAGTCACCCATGTGGTTGACAATGCTACCATCATAAAATTTAGAAGCAGGGGCTTGAGTTTGACCCAGATTTGTCATTTCTATGCTCTATGAACTAGATAGATTTGTCAGCTTCTCCAAGCAGCACTACACACAGGAGATAGTTCTTTCCCTCCAGGTCCTCCCAGGTGCGATGTAAGTCCTCATGTTGGATCACCAGGGTACCAAAGTTCTGTGTAAACCTGAGGGATAGTAATCGGAATTGTTCTTGGGAAGCCATGTTAACATGAGACAGAGCCTGGAATGATTCTTACCCAGCCTGTTTCCCAGCATAAGAACAAAACAGTGTGTCTTCTTGCTGGATCTAAGGAACTGAGGTTTTTGATTTTTTCAATTATCTATTATTTTATGTGCATAATTGTCATCCAAGTGACTTCAATCTCCATCTGTTACTTACCGAACACATTGTTGGCCTTGAAGGGTGGGGTAGGGGAAAGGAAAGAATAAAGAATAGGTAACGGGGATCTGGGGAGGTGGGTTGATGGATAAAGAGCTTGGCCCACAAGTGTGCGCACTGGAGTTCAGAAAGCAGGTAAAAGCGGGGCAGGTGTGGGGGCTGCTTATAATCCCACAGGTCAGAGGCAGAGATATGGGGTCACCAAGGGCAAGCTGGATAATTAGACCAACTGGATTTGTCGAGCTTCAGGTACAGTGAGAGACCTTGCCTCTATAAATAAAGTGGGGATTGATTGAGGAAGACACCAGTTTCGACTTGGGGCCTCCACATTTCACACACACACACACACACACACGCACACACACACACACACACACACACACACACACACACACACACACACACAAATTACACATAAATTAGTAATGAGATTATGACAGCTCCTTTGCCAAGCCTTGGTCTTCCTCATAGGCTCGTTCTGCCTAGACACTTTTTGCAGGAGACTCGGGGTGAGTAAGGAACATGGTCTTTATTTCAAGAAGCAAGTTTACAACAGGGCTTCTGAGTCCTCATCCTAAGGAGGGTGTTCTCAGCAGGACTCTGCTCCTCTTGGAACTTCTGCCCCCTTTGCCCCAGTTTTGGTGGCATACGAGAGTTCAGATGTGTTAAATCCAGTGAGATTACAGATGGACTCTGGTATATTATTACTATTGTGATAAAAATACAGGTAGTGCCATGTTCCAGGCCCTCAGCCTACAGCCAGCAAGCACAGCAACATGGTGTCCCGCCACCATCTCAGACTCCAGAACCATGGCGTCCTCCTGAGTAGACACTCAACACTTTAAATAATACCTCCTCATCCCCATCCGACTCTAAGTTCTGTCTCTGGAAATTTGATGACTCCAGGTGCCTCTTCCTAGAATGGGAGTCACACAATGTTTGTCCTTTTGTGTCTATCTTATTCCAACTAGCATAGCGTGCTCAAGGTTCATTCTCGTCAGGGTCTCCCTTTGTAAGGCTCTGTAGTCTCCACTGACAGCACTGACAATGCTTTCTTTATTGTGTCTCTCGGGACATAGGTTATTCCTCCCATCACACAATTCCCTCTGATTGCTTATATCCACTCAGATGGCAGACTGGAATCCGAGTGCCATGTGAATTTGGAGTGAAGCCGCACCTGTGAGGCTGGAGGAGGACACATAAAACACACGGTGGATGTCGTTGCATACTAAAAAGACTTTTCAATATTATGCTTATGGTAGGGAATTTAGAAAATGTAGAGATGTAGAAAAGTGTCAAAAAGTTTTTAAAAGCCTCTGGGCGAGGGAGGGATGCCTTCCCCTCTGCCTTGCTTCCTATGGCAGGCAGGAGAGCTGGCTCTGAGGCCATTAGAGGGGAAGAACTGTCCCTGTCCCTCACCAGCTGCAACATTTGGGAGAGCGGGCCCTTCACCTCCCTTGGGTAGCAAAGCAGAGCTGGCACTGGTTGTGGAGATGGCCGGTGAGCCGCCTTGATGTCATGAGAGTGGGAGAGCTGGCTCTGCCCCCTGCTGGTGGAGGCATTGGTGACCTAGGCCAGGCAGGGATAGAAAACCTGGTGCTGCAGACTGACCAGCTCAGATACCTCTCAGGCCCAGATCCAGGGCTGTGACTTAGCCCACCCCAATAGCTACCTCATCCATGAACCACTAGAGCATGCGAAGGGGTCCTACAGATCCAATACTACAGGATCTCCATGACACAGGGCAACAACAGGATATTCAAGAGGAGTCCCAGTGAGGATCCAGTATTGCTAGGGTAGCAGCAGCCAGAGACCTTGGACCAGATCAATGACTCATTGCAATGTACATTTGCGGGCAAACAAGTGTGGACAAAAGGGTACGCTGTGGGACACCCTTTGACACAGTGCAGCTTCCACAATAAGATTTTTTCTTTTTCTTTTTTCTTTTCTTTTGTGGTGGGGCGAGGTTGCCAGGGTGGAAGGCAGGTATGGAAGGATAGAGAAATGAGTGGGATTGGGGTGCATGATGTGAAATTCATAAATAACCAATAAATTTCATTTAAAAAGTTAAAAGTGCCACTAATCTAGGCCCTAGAGACAACAGGTGACTGCAGGCACACAGAAGAAAAATAAAAGAACATGCTGACCCTGATTGTTTTCCGTAGACGTGAAGGAGTTGGGGTTAGGGAAGCAGGCCCAACACGAGGCTGCGGCTTCTCCAGAGGCAGCTGAGCATGGTGCCAACAATGAAGGCTGACTCCCAAGGCAGGTCTTCCTGTTACCCCCCTATAGGGGGCGCTGTTCTGGAAGACCCTTCCGGAGCTGACACCTCTTGGAAATCACTAGCTTTTTAAACAGTTCCCTGGGACATGTGGGGAGGGATCAGGACAAAGCAGTCACCTCTGTAAGAACCAAGGCAAGGCAGAGAAAGGTGCAGCCAGGCTGCGTGTAGGTGTACACAGGTACAAAGGTGATGGTCCTCCAAGAGAACAGGCGATGAATGAAAATCTCAAATTTTAAAAAAGACGTTTTGAGACTATAGCGTAATTACATAGTTTCTGCTTTCTCCCCCACCCCCCGTCACAAACACACCTCAGACCCTCCCATGCACATCCATCCCCCCTTGTTCTTTATCAAATTCCTGGCATCTTTTTAAAGATTATCCATATATATTATATATTAAATAAAATATATAATATATTCCTATATACATAAATATAACCTTCCTAAGCTGTATATAATGATACTTTTATGTATGTTCCCAGGATGAGCATTTGGTACTAGAGAACTAATTGGTGTGCTTTCTCTTGAGGAAGGCCATTTCTTCAGCTCTCAGCCTTCCTTAGCTGACAGGAGTTCTTTGTGCTGGAGAGCTTCCCTTCCATGTTTGCATATCTACCATTGTCATTGTACTGCCTGGTTTTGTGTATCAACTTGACAGAAGCTGGAGTTACCTCAAGAAAGGAGCCTCCCTTGAGGAAATACCCTCATGAGACCCAGCTGTAAGGCATTTTCTCAATTAGTGGTCAAGGAGGGAGGACCCAGCCCATGGTGGGTGGTGCCATCCCTGGGCTGGTAGTTCTGGGTTCTGTAAGAGAGCAAGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGCAGCATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAATGTGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGTTTTTTGGTCATAATATTTGTGTAGGAATAGAAACCCTGACTACAACATTCATCCTTGCTCAGCTCATGTAAATGAGACTTGGGTGTAGCTTCTGACATTTCTAGGAGACACAATCTCCCAGCAAACTCTCTGTTCCTCTGGCTGTGGATCTTCCCACTTCCTGTCAAGCGATTCCCAAGCCTTAGTTCAGGTGCAGGAGTTCCACTGTAAATGTATCAGTTGGGACTGGGTGGTCTCGCTCTGTATATATTGCTAGACACCAGAGGAGAATGTGCATGCAAGATCTGGCTGGATGGTGAGGGGTTGTGGGGGGCTATGGCTGAAAATCTTAAAATTTCATGAGTCTCTGAATTGAAATCTCTTGGTTTCCCCTAAATACACCCTGGAGCTGTGAATTATAGTAGTAAATATGACCCATAAATTGAAGCATGTTGACGTGTTACCCCATTTACTCTTTCTCTACTTGGCACAGACAAGTCACTGTGTGTTCCCACTGGGTCACAGTGCACTGACCTCCACATAGCAGCCTGGTGCCTGGCCCCCCTCTTTAGTGTTCTGGAGCTCACACACAGACGCCTATGACTCCACTGGACTATGTACCCGTTCTGGGAGGTCATAGTAACCCTATAGATAAGCTGAATTCTCGTGTGCTGTTAATGACATGGCCCGGACTCAAAGCCACGTTTGCAGACTGGATGGGGTAAGGAGCACAGTGCAGAACAGTGACAGTTTGGAGGAGAGACAGCAGCCGCTGGTGGCTCTAGACTCTCGGCTGGTCATTTGGGACAGGACAGGATAGACCAAAGGACGAGGATCATAGAAAAGAAGCTTCACAGCTGCATTGGTAGCAATGGTGATTCTGATTCCTGCCTGGATGTGGCCACTTCTGTGTTCAAAGCATCTTCTCACAAATATTTGTGAAGCCATGATTAAGAACACACAATATTTAGCTATGAGTGGCATTTAGGGCCTTAGAAATGCTGTGCGCCTATCACCATTCTAAAACATCTCAGAACATTCTCATTACTGTCAAAAGGAACATGATGTCTATGCTAAGAGCCAGTGTTCTATCTCGAGTCTATGTACACAGGGTACCATACATGGACATTTGTATACATGAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGCATGTGTGTGTGGGTGCATGTGTGTGCACATATATTCAGGGGCCACAGTCTCAGATGTTCATTAGGTGTTATCTTTACTTTTGAGACAGGACCTCTCACTGGGTCTAGGGCTCAAATGACTAGGTTTGGCTGAGTGGCCAGCAAGTTCCAGAGGTCATCTGTCAACGGACTCTTGCAGTATGTGGCTGGCCTCTCTCACATAGCTTGTTTTAGAAGTTCACCCCATCAATCGCAAGCGTTGTTAGTGCTTGATTCCTTCACTGAACCCCACTGTTTATATACACTGCCCATCACTCCATTGCTCAACACCAATCACATTTGGTTACCTGCATCTTTGGGTCATTGTCACTAGTAGCCAAATCCTTCTGCTGACCACCTTGTCCAATGCAGTTAGCCGTACTTTATAGATGAAGAGTTGAGGCTACTGTGGCAGGAAGGCTATCACTCTGTGAAGGTCAGTCATGTCAGCTTGTTAGTTAAGTAACTAACAATCCAGTGGCTCTGGAAAAAAGGAGAAGTCTGTCTCCATAAAGCTGAGCAGCCAAGGGGCCCCCTAAGCTAGGCAGGCCCATTGACAGCCATTGGCTCAGTGTCCAAACCATTATGGAGTGTGAAAGACAAACACACTGCATGCCACATTGCTTGACCCTAAGTGTCCTCTCCTTGCTTATTCAG
Seq C2 exon
TTGCAGAGAGACAGTGCCTCAAAGAAGCCAGCTCTTGGTAGTCCAAGGGAAACCAGGACCCTCTGAAGCCATGACCCTTTCCCATTCTGCTCTCCAGTTCTGGACACATCTTTATCTCTGGTGTCTCCTTCTGGTGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017424:ENSRNOT00000023475:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]