RnoINT0036752 @ rn6
Intron Retention
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34482842-34483023:+
Coord C1 exon
chr13:34482842-34482858
Coord A exon
chr13:34482859-34482980
Coord C2 exon
chr13:34482981-34483023
Length
122 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
CAAGACCGCTCAGTCTGTTGACA
3' ss Score
-10.38
Exon sequences
Seq C1 exon
AGCTGTATCACCTTGGG
Seq A exon
GTAAGACTTCGAGCGCTACATTCACCCACACTGTGATACAGTCTCTCAGAGCTTTAAAGGGAACTCTTTGTCTTGTCTGTGGGGTCACCTCTAGCTGGTTTCCAAGACCGCTCAGTCTGTTG
Seq C2 exon
ACACTTGCGTCCCACACTCGGGGTAGCTGCTGCTCAGTATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376:ENSRNOT00000061513:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(2.3=100)
A:
NA
C2:
PF123483=CLASP_N=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]