RnoINT0037274 @ rn6
Intron Retention
Gene
ENSRNOG00000029682 | Clic1
Description
chloride intracellular channel 1 [Source:RGD Symbol;Acc:1303043]
Coordinates
chr20:5045275-5049166:+
Coord C1 exon
chr20:5045275-5045456
Coord A exon
chr20:5045457-5048772
Coord C2 exon
chr20:5048773-5049166
Length
3316 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
GACCTCTCTCCAACCTTCAGGTG
3' ss Score
9.82
Exon sequences
Seq C1 exon
ACCTAGAGAAGGGACTCCTGAAAGCCCTGAAGGTTCTAGACAATTACTTGACATCCCCCCTCCCGGAAGAAGTGGATGAAACCAGCGCCGAGGATGAGGGCATCTCTCAGAGGAAGTTTCTGGATGGCAATGAGCTCACCCTGGCTGACTGCAACCTGCTGCCAAAGCTTCACATAGTCCAG
Seq A exon
GTCGGTGGTGGCCGTCGGTGGTCGCTGTGGGGGGGGGGGGAACGGGATGAATCTCTATGATGAAATTAAAAAAAGAAATCATCTCTAATTCATTACAAGGAGCAGTGCACAAATGGGGTATGGAAGTTCCAGGAAAATTGGGGGGAATTGGTTCTCTCCCAGAAATTGAGCTTTGGTCACCTAACTCGGCTGTAGACGCTTTTACCCAGCTGAGCAATCTCATCGGTCCAATGGCGCTGCCTATCATGCCTAGGTTTTGATGTTAATGCTGAGAACCCGAACTCAGGCACTCATACTTGCAGGGCAAGCATCCATGTTCTCCAAATGGTTTCCATAGACTGTAACCAGTGGTGGACCCCACCCAGGGACCACCATCTATCCCTTAGCAGAAGCTGCTAAGTAAGAAAATTACATTCCAGGAGACAAGTCGTGGTTATATAGCATCCAATCAAGAGTGGCATTCAGTTTCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTGTGTGTGTGTGTGCATGTGTGTCTGTGTGTGCCTATGTGTCTGTGTGTGCCTGTGTATCTGTTAGTCTGTGTGTGCCTGTATCACTGTGTGTCTGTGTGTATGTGTGCGCCTATGTGCCTGTGTGTCTGTGTGTATCTATGTGTCTGTGTTCTGTGTGTGCTTATGTGCGTCTGTGTGTATGTCTATGTGTCTGTGTGTATGTCTATGTGTCTGTGTGTATGTGTGTGTCTGTGTGTATGTCTATGTGTCTGTGTGTATGTGTGGGCCTGTGTGTCTGTGTGTGCCTGTGTGCCTATGTGTGGGCCTGCATGTTTGTGTCCAGGGTTGCTCCCAAGTAGGCTTTTCCTGCAACTATATCACACAGTATTGCACACATCAAACATAGGATTCTCCCATGTCTACATTGTAACTCTCCACATAGCCCAGGCTTTCCCGTTTTCTCTCAAGGACTCTTCCTTAGTTGCTGTTTCCTTTCTGTCCTTAAAGCTACAGTGTAATTTAGTAAAACATAGCCACTCTCACTCCACCATCAACAGAGTAGCACCAGAAAAGGCTGGGCAGAGTGGCTCATGCCTGTAACCTTCAGCCTGCTAGGCCGAAGTAAGTTCAGTGTGAGTTGGAGACCAGCCTTAGCCACAGAATAAGACCCTGTTTCAAACAACACCACCTCTACCCCCCACACACACACAAAAGAGAAGGGAAAAAGAGAAAAAAAGCAAATGATACTAAGTTAGTTCTTGCCCACAAACAGTGGAATTGGAGATAAGACATTCGCATCAAGGGATGTGATGGCTGGAGAGATGGCTCAGTGGTTAAGAGTTCTGGCTGCTCTTCCCAAGGACCTGGGTTCAATTCCCAGCACCCACATGGTGGCTCACAACTGTCTGTAACTCCAGTTCTGGAGAATCTGGCATCTTCACTCAGATGTACATGCAATCAAACACCAATGCACACAAAATATAAAACAAACAAACAAAAAAAACCCCATTCACATCAAGGTACTAATAGATGACCTGAAAGTCAAGTGGACAAAATTCACTACAAAAATGTTACTCTTTACTAATTATGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTTGGAAATGGAACTCAGGACTAACCACATGCCTAGCCTGTGTCTGTCTCTGCCTCTGTGTATATTCAGTTTTAATTACATTGTAAGTGCAGGTGCCTTTGGAGGGCAGAAGGGGGAGGTAGAGCCCCTGGAAGTGGAGCTACCCAGTGAGGTTGCTGGAAACCAAACATCTGCAAGAGTTTGCAGAGGGTGCTTTTCACCACTGAGCCATTTCTCAGTCCATTTCTCTTCTGTATTTTAGTTTCTCGAGACAGGGTCTTTCTATTTAGTTTTAGCGACCAGGTGAGTTCTAGGACAGCCAGGTTTACACAGAGAAACCCTGTCTCAGGGGAGGCGGGAATGAGGATCAGGGATGGAGGGGAAAGAATCAGTAAGAAGTCGCCAGATAGGCTGGAGAGATGGCTTAGTGGTTAATGTTGCTAACTGCTCTTTTTTATTTTTTTTTATTTTTTTTTTATTTTTTTCGGAGCTGGGGACCAAACCCAGGGCTTTGCGCTTGCTAGGCAAGCACTCTACCTCTGAGCTAAATCCCCAACCCCGCTAACTGCTCTTCTTGAGGACCCAGGTTCAGTTCCCAGCACCCACATGGCAGCTAACAGCCATATGTAACTCATACCAGAGGATCTGATGTCCTAGTGCACAGTCATACAAATAGACAAAACACCCATCCACATAAAATAAAAATAAATGTAGCCAGCAAGTGCATGGCTACATGCACTTAAATCCCAGCACTTGGGATGTAGAGATGGGTGGATCACAGAGTTTGAAACCTAGTCTACAGAGCAAGTTCCAGGTCAACCGGAGTACACAGAGAAACCCTGTCTTGAAAAACTTTTTTTTTTCCTTTTTTTTTCCTTTTTTTTTTTTGAACTGGGGACCGAACTCAGGGCCTTGAGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCTTGAAAAACTTAAATAGGGCTGGAGAGATGATTCAGTGGTTAAGAGCACTGACTTCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAATCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTTTGGTGTGTCTGAAAGCAGCGACAGTGTGCTTATATATAATAAATCTTTTTTTTTTTTTTTTTTGAGTGAGGACCAAACCCAGGGCCTTGAGCTTGCTAGGCAAGTGCTCTACCACTGAGCTATATCCCCAACCCAATAAATCTTTTTTTAAAAAGCCTAAATAAATAACATCTAGAAGGACAATTTTTTTTTTTTGGTTCTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTAGAAGGACAATTTTTTTTAAAGACTCTAGGCACAGGGTGCATGCCTGTAATACCAGTTCTCAGGGAAAAGGTTCCAGAGATCATCCAGCATGGGTTACATAGAGAGACCCTGTCTCAAAACAATGGCAGCAAAAAGTCTGTAAAAGTGGAGGCAGAATAGTCCGGCAGCCTGGACAGGGCTCAGTTTTACCTGACAGACCTGTAAAGACCAGGTAAAGGAAGAAAAAGTTCAGTAGCTCCAAGCAAAGCAAGCATGTCTTCCCTGGGGCTAACACGCTGACCTCTCTCCAACCTTCAG
Seq C2 exon
GTGGTGTGCAAAAAGTACAGAGGATTCACCATCCCGGAGGCGTTCCGTGGAGTGCATCGGTACTTGAGCAACGCTTACGCTCGGGAAGAATTCGCCTCCACCTGTCCTGACGATGAAGAGATAGAGCTGGCCTATGAGCAAGTGGCCAGGGCTCTCAAATGAGCACCTTTTTAAGGGTCCTTCACCCACTCTGTGCTCTCCACAGAGGCTTCCACGTTGCTACATAATGGACACACTCCGATATAGCCAATGGGCAGGAAATCCGGGGCACTTGTGCAGGGCCGGGGATGGGACTGGGGATAAGGGAAAGATTAGAGGACAAGGGTAAGATTTTTATTTTTGGGTGGGTTGGGTAAGACAACGTATTTCAGTAATAAAATACAGAATGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029682:ENSRNOT00000068435:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(66.7=100)
A:
NA
C2:
PF134101=GST_C_2=PD(25.6=42.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]