RnoINT0037276 @ rn6
Intron Retention
Gene
ENSRNOG00000000728 | Clic2
Description
chloride intracellular channel 2 [Source:RGD Symbol;Acc:1306580]
Coordinates
chr20:304751-305110:+
Coord C1 exon
chr20:304751-304860
Coord A exon
chr20:304861-304984
Coord C2 exon
chr20:304985-305110
Length
124 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTTTTTCAATGATCATAGAAA
3' ss Score
5.49
Exon sequences
Seq C1 exon
GCTGGAAGTGACGGAGAAAGTATTGGAAACTGTCCTTTCTGCCAACGCCTTTTTATGATACTCTGGCTTAAGGGAGTTAAATTTAATGTGACTACTATTGATACAGCCAG
Seq A exon
GTAAGATAAATCAGCATACGTTGAATTCTGGGGATTGATATTGGTAGACAATCATATGATGTTAGTATCGATATTATGTACTTTGTTTAGAGACCTAACTCTTCTTTTTTTTCAATGATCATAG
Seq C2 exon
AAAACCTGAAGAACTGAAGGACTTAGCCCCAGGTACCAACCCACCATTCTTGATATATAACAAAGAGTTGAAAACAGACTTCATTAAAATTGAGGAGTTTCTAGAGAAGACACTCGCTCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000728:ENSRNOT00000000955:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(39.5=81.1)
A:
NA
C2:
PF134171=GST_N_3=FE(55.3=100),PF134101=GST_C_2=PU(15.4=51.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGTGACGGAGAAAGT
R:
TTGGAGGAGCGAGTGTCTTCT
Band lengths:
235-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]