RnoINT0037392 @ rn6
Intron Retention
Gene
ENSRNOG00000030126 | Clk3
Description
CDC-like kinase 3 [Source:RGD Symbol;Acc:621259]
Coordinates
chr8:62528225-62529367:-
Coord C1 exon
chr8:62529277-62529367
Coord A exon
chr8:62528635-62529276
Coord C2 exon
chr8:62528225-62528634
Length
642 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CACCTTGTGTCCTTGAGCAGAGT
3' ss Score
5.44
Exon sequences
Seq C1 exon
GAAGCAGAAGTATTTCTACAAAGGGGGCCTGGTTTGGGATGAGAACAGCTCTGACGGGCGGTATGTGAAGGAGAACTGCAAACCTCTGAAG
Seq A exon
GTCAGTTTATGGCTCCCCCAGCTCAGCTCATGCCAAGGAGACCCCAGGCATTGGGCAAACAAGCAGCAGAGACAGGATGGGCAGCCAACAGCTGCCTGATCGTCTCAGTTCTCTGTAAGGCAGCACCCAAGACTACTGGGTACTGGCAGTGAGGCTTTCTGCGTGCTGCCCAAGGGGCCCTTAGCCCTGCCCATCTACAGGGTGGCTGAGAATGTAATGGGGGAAAAAACCCAGAAGAGCCAGCTCTCAGATTGCCAGTTCCTGTCCCTCTCTCTGAATTTTGGGAAGAACTAGGCAGGACTGAGGCAAGTGGGAGGGAAAACCTAGATGTGGCCAAAGGAGGCCTGTCAACTGTAATTTGGTACCTGAACAAGTGCATTTTTCAGAGGTGATTTCTACCCGCCCATCAGAACTTTGCATGTGGGGTAGAGGCACCAACCCAGCAAGATCCCACCCTGTAGCCTAAGTTCTGAACATGAAAGGAGAGGAGCGGCTGTTCTGTCCTGAAAGGCAGAAGTAGTCCTCTAAGGAGGCATCCTTGCCTCCTCGACCCATCCCAGCAAGGCTTCCCAGAGGCAAGGGGACTGCGGTGGCTTCCCACAACCCTGCCGTCAAACTGAGGCACCTTGTGTCCTTGAGCAG
Seq C2 exon
AGTTACATGCTCCAGGACTCCCTGGAGCATGTGCAGCTGTTTGACCTGATGAGGAGGATGTTAGAGTTCGACCCTGCTCAGCGCATCACACTGGCAGAAGCTTTGCTGCACCCCTTCTTTGCTGGCCTGACCCCTGAGGAGCGGTCCTTCCACAGCAGCCGTAACCCCAGCAGATGACAGGTGCAGGCCAGCACACGAAGAGTTGGAGAGCTGGACTGGGCTGCTGGCCCCTTTTCTCCAGCCTCTCCTACTGGCTTCAGAGCCAGAGCCACCGATGAACAGTGCAATGTGAAGGAAGGCAGGAACCTGCAAGGGATTGGGGGTGTGGTGCCCAGCTGCCAGAAAGCACAGATTGGACCCAAGCTATTTATATGTTGTAAAGTTATAATAAAGTGTTTCTTACTGTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030126:ENSRNOT00000068108:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.5=100)
A:
NA
C2:
PF0006920=Pkinase=PD(12.3=66.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGGTATGTGAAGGAGAAC
R:
CAGGTTCCTGCCTTCCTTCAC
Band lengths:
345-987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]