RnoINT0041763 @ rn6
Intron Retention
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113912764-113913189:-
Coord C1 exon
chr13:113913090-113913189
Coord A exon
chr13:113912847-113913089
Coord C2 exon
chr13:113912764-113912846
Length
243 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ATTCTAACCCCTGTCTCCAGGTA
3' ss Score
8.15
Exon sequences
Seq C1 exon
AGGCCAAGTGTGAACGTCCAGAAAAGCTTCCCAATGGGCAGGTAAAAGAGCCTCCGAGTCTTCGGGTTGGCACAACTGTGTACTTCTCCTGTAATGAAGG
Seq A exon
GTGAGTATCAGCAGATTCTGTAAAATTTAATGTTCTTGGATTATATGTGCCTGCTGTGAACCATGAAGCCTACAGAAAGAGCATGGATGAGTCTGGAATAATCTGGAATATAGTGGTGAAAGAGAATACTGGTAAAAGAGTAACTGTGCAGATTAAGTGGACTCTTCGTAGATTTGAAGTCAAGCCTGCCAGTTTTACAGCACAAACTGCCTAATAGTACCAAATTCTAACCCCTGTCTCCAG
Seq C2 exon
GTACGAGTTACAAGGACAACCATCTAGTAAGTGTGTAATTGTTGAACAGAAAGCCGTCTGGACCAAAAAGCCAGTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164:ENSRNOT00000010910:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(52.6=88.2)
A:
NA
C2:
PF0008415=Sushi=PD(45.6=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGTGTGAACGTCCAGAA
R:
TTTACATACTGGCTTTTTGGTCCAGA
Band lengths:
180-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]