RnoINT0041765 @ rn6
Intron Retention
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113909429-113912191:-
Coord C1 exon
chr13:113911784-113912191
Coord A exon
chr13:113909606-113911783
Coord C2 exon
chr13:113909429-113909605
Length
2178 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
TGTATCTGTTTTTCATTTAGGAT
3' ss Score
11.31
Exon sequences
Seq C1 exon
AAATTCTCTGCCCACCACCTCCACCTGTTCTTAATGGAAGACATTCAGGCAGATTTTCAGGAAATGTACCATATGGAAACAACGTTACCTACATGTGTGACCCAAGCCCAGAGAAAGGAGTGAACTTCACTCTTATCGGAGAGAAGACTATCTATTGTACCAACAGTAGTGAGAAGACTGGGATCTGGAGTGGCCCTGCTCCGTACTGTAAACTTTCAATTTCTGAAGCTCAGTGTCTACGACCCCAGATTAATAGGGGGCAAATATTATCTATTTTGAAGGAGAGTTATTCATATAATGACACTGTGGCATTTTCTTGTGAACCTGGCTTCACCTTGAAGGGCAGCGGGAGAATTCGATGCAGTGCCCAGGGCACATGGAAGCCACCAGTACCAGTGTGTGAAAAGG
Seq A exon
GTAGGTGCCTCGTATGCAAAGATGAGTCGTTTCAAAAAGTGAGAGGAAGGGTGTATGGATTTTACACAGGGTCTTTCTAGTGCCTATACTTTTAGTCATGGTTGTGGATACAAATTATAAAGAAGGCGTTCGTATCACCCTCTCAGCACTATGGAAAATTCACCACAATTTTACTAAGTTGTCCATTTCTTTAGAAAATATGAGAGTAAAACCTCTTGTTTGTCTTAACAATCATTTTAAAAAGGACAGCTAACAAAGCTTTCACCTGGGAGAGTATATTAAAATATTCCATAAAGTCTTCTAAGATAGTTTCTTCGGAGGAGAAAATCTGGTGTAATGCCATATGCCAAAAATGCTATTTTGGGGAGACCGATACAAGAAGATTGTGAATTTGAGATCATAGTAAAATCCTATCTTTAAAAGAAAGTAAAAGACAGAGTTGGGGGAATAGGCAGTGAGTTACAGCAAGCAGGAGCCAAACAGATTAGTGCCAGCCTGCGTATAAAAAAAAAGATGATTAAGAAATGAGAGCTGACATTAGCCATAACATTGTGATCTGGATTGGTTGAGAGACTCTACCTCAATAAAGATGGGAGAGCTATTGAGAATGATCCCTGACATCTGACTGAGGACTCATATGCACCTGCACCCCACACATGACAGTGTACATATACAAATGTGCACACTTCCCACAAGAAACAGGGAAAAGGCAATTTTAAAAAGTCAAGTTCTGAAATTAACATGTGTATCCTTTAACACATGCATTGTTTATATATATATATACACACACATAGTAGAGTTTACTCAGTCAAAAGAATGAAATTATATCTTTGCAAGAGAATACATGTAATTGTAGAACATCATGTAAAGTGAAATAGCTATACTTAGAAAAACAAATACATGTTTTCGCTTGTGGAATCCTTTTTCCAGTGGAGAGGGGACACTTTTTGGACAGAAGAAAAGAAACGATAGGAGAGGAAATCAAGAGTATGAATATTATCATGTTATAGTATATATAGAAAGTGTCATAATGGAACTCATTCTGCACAGTGCTAATAAAATATTCTAATTTTAAGGCAATGCTTGGTGGTTCATTACCGTTAGTCCAAGAATGCAGGAAGCAAAGGCAGGCAGGCAGCTCTCTGTGAATTGACTACATAAAAGATACTGTCTCAAAAAAGTCCATAATTTCACAACTATAAACAAGCTATATTTCCTTTATGTTTTGCTATTACACATATAGAACTTTAAGAATCCATAATATTTCACTAAATCTAACCGCTATTGTAGTAGAAAAGCAAATAGAATGCATTAAAAGGTGTTTTATTACTGGGAATATGTATATACATGATTTGTGTGTATATGTGGTGGGTTCACCAGTAGAGATCAAAAGACAACTTTCAAGAGTCAGTTCTGTCCTACCATAAATTCTGGGGGTCCAATTCAGGTCATCATGTAGGCAGAGCAAGCACTTTCTACCTGCTGTGCTGTCTTGCCAGCCCTAGAACGCATGTTTAGAAATACCATTGAGACTGGGGACTGGGTTGCCCATAGATGAACACATTTGCTCTTGTAAGCATGAAGATCTGAGTTTGAATCCCCACTATGTACTCAAAAGTCATGTATAGTGCTCATTGCGGTAACCCCAGCTCATTGTTGGAGGTGGATCCTGAGAAATCTGTCACCAACCAACTTAGTCAAATGGAGAGCTTCAGTATAGTGACCCTGTATCAGGGCTCAACTCACTACCCTCCCACTACTGATGAACTAGAAGATTTATGATTTTTACAGCTGTTCCCTAACTTCAGAACCTAGATTGTCTTTATGCTTTTCTGTATTTCTACTGTCAAATGTGATTCAGATTACTTTTCTGTATACTATTTTATTGCCTGCCTTTCTCTAGTAGACTATGAGTTATGCAAAAGAAATGATACTGAATACACTATAGTAGTGTTCATTGAAACCCTGTTGAATAAAATCCATAACTTTAAATCATTGGGCAAGGGTAAAACAAAAAAAGAAAGAAATGAAAATGAAATTACCTGAGAATTACAAAATACCTTCTGTTCCAGACAACTACCATACAAATGATGGTATTATCATATTAATTTTGACTACTTTGGCTCAGTTTCTATTTTTTATGCTGACAATGTTTCATTGTATCTGTTTTTCATTTAG
Seq C2 exon
GATGTCAGGCTCCTCCTAAAATCATCAATGGGCAAAAAGAAGATCGATACTTCCTCAACTTTGACCCTGGTACATCCATAAGATATAGCTGTGACCCTGGCTATTTCCTGGTGGGAGAGGACACGATACATTGTACCTCTGAGGGGAAGTGGACACCCATTCCCCCCCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164:ENSRNOT00000010910:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=40.9)
A:
NA
C2:
PF0008415=Sushi=WD(100=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]