RnoINT0041822 @ rn6
Intron Retention
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56317166-56320024:-
Coord C1 exon
chr13:56319477-56320024
Coord A exon
chr13:56317332-56319476
Coord C2 exon
chr13:56317166-56317331
Length
2145 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TGATTTTCTTTCTTTCTCAGTCC
3' ss Score
9.93
Exon sequences
Seq C1 exon
AGTATGTAGCGGGAAGATTTGGCCAGGATGACTCCACCGGATATGCTGCCTTTAAAGTTAATGATAATTTTGGACAGAACTTCAATCTCTCCATGTTTGTCCGAACACGTCAACCCCTGGGCTTCCTTCTGACGTTAGGAAACAGTACTTACCAGTATGTCTGTGTCTGGCTAGAGCATGGCAGTCTAGCACTGAAGACTCCGGGCTCTCCCAAGTTAGTAGCAAATTTTTTTCTCAGTGATGGAAATGCCCACTTAATATCTTTGAGAATCAAACCAAATGAAATTGAACTGTATCAGTCTTCACAAAACCTAGGCTTCATGTCTGTTCCTGCATGGACAATTCAAAGAGGAGATGTCATCTTCATTGGTGGTCTACCTGACAGAGAGAAGACTGAAGCTTATGGTGGCTTCCTCAAAGGCTGTATTCAAGATGTAAGATTAAACAGCCAGAATCTGGAATTCTTTCCCAATTCAACAAACAGTGCACAGCATGATCCAGTTCTTGTCAATGTGACTCAAGGCTGCCCTGGAGACAACGTCTGTAAG
Seq A exon
GTAGGGTCATTCATGTCAACTGCACATGTGGTGCATGCGCAGGTTGTGTTTATTAAATGATCCATTATAATCACTCTGCTTTTCTCTAGGTTTATTGTTGTTATTGGGTTTTTTCTTGCTCTTTTATATTTTGTTTTTGTTGTTTGTTTGTTTTTGAGATAGGCAACTATGTACCCCAGAATGGATTTGAATTCACCGTCTTCCTTTGTCAACTTCTCAAGTGTGGGTGGGGATTACAAGAATATGCTACCACACCCGTCTAAACATTTTCTATGTGAACAAAATGCTGATGTCCCACCAGCCATGGGATGTTTTTCATCCACATGTCTCAAGAAAGCCTGATAGAGTCACAAAGAACCATGAAAAAGTGACATTAGTTTTTTTTTTGTTTTTTGTTTTTTTTGTTTTTTGTTTTTTCATCTTTATTAACCAGTATTTCTTATTTAAATTTCAATTGTTATTCCCTTTCCGGGTTTCCAGGCCAATATCCCCCTAACCCCTCCCCCTTCCCTTCTATATGAGCTTCCCCTACCCATCCTTCCCCCATTACCACCCTCCCCGGAACAATCACGTTCACTGGGGGTTCAGTCTTGGCAGGACCAAGGGCTTCCCCTTCCATTGGTGCCCTTACCAGGGTATTCATTGCTACCTATGAGGTTGGAGCCCAGGGTCAGTCCATGTATAGTTTTTGGGTAGTGGCTTAGCCCCGGAAGCTCTGGTTGGTTGACATTGTTGTTCATATGGGGTCCCAAGCTCTTCCAGTTCTTTCTCTGATTCCTTCAACGGGGGTCCTGTTCTTAGTTCAGTGGTTTGCTGCTGGCATTCGCCTATGTATTTGCTGTATTCTGGCTGTGTCTCTCAGGAGAAAGTGACATTAGTTTTTAATGACATCATAAATATGTAACAGTCAACATAACTTAAGTCACATGCTTCTCTTGTTCCCAAAACAATCGATTTCCCTAAGAATAATAGTATTTTAATCTACACGTTCTTAATGGTGTTCTATAGGTTTAGCACAACTACTTCCTTTTCAAAGACCCCACTAAATTTAGTGTCAATGCCCAGCTACTTTTGTTCAGTAAACAACAAAATTTCAGTTTTCTTTTAGTAGTTACATATGAAAATCTTTGTCTTATGATTACTCAGAGTCAATATTTTGTTTCAAACACTTTTCATGTCTTCTAAATAGTTTTAAACATGTGAGATGATTATCTCTATGAGCTTTTGAAAGAAAGAAGGAACATCACTGGCATGACTTGAACATCTATGAGCCCCAATGATTCCTGTATATGAGACTCAATTCTAAATATATGTGAATGAACCCCTTTAATATTCTTATAGGAATGCTTTTACTTTAATTGAAATGATTTTAGACTACTATATAAAAGGAACATTTTTAGCATTTATATATTTACCGATGGAAAACTAAAGTTTATAAATTTATGTGATGGAGCTCAGTGGAAGAGTGTAGGCTTAGCAAACTTGAGGCCTATGTTCTACCCTCAGAAGTGGAAAGAAGGAAAGGAGATGGGACATAACTAGGAAAACCCGTGTTAATAATAGACCCTGGATAAATGCAGTTCAGGATCTAAACAAAGAGTTTAAAAATATTTGTGTTTTGACCACTCTCTGAGTGAACTTGAAAATTAAAACAGTACTGTGTCCTTGAGAATTGGAGGCAGGGGAAATTGGGGCTTAGAGTATGGAGTACCAGCCTACAATATTTCCCCTTCTTGTGGGATCTTAGGCAACTAGAAGTACCCAGAAGTAAGAATTGTCACACTCAGTTATAACAGATGTGTGCAAAGTGCCTGGTAACTTGTAAATTGTGGTGAATATCCTTCTATTTCAATAATCCCTCTCATGTCATAAGTCAGTTTTACATTTTCTCTTCTTTTATTGTGTTCTTCCTTTCCTTTTTATCTCCCCCACACCTCTGTCTATTGCTCATCTCTCTGCTCTTTTAGTGAGCCATTGGAAATGGTAGTGGTCAGCTTTATTCTATATTATTAACAATGTACAGAATGGCTAAAATGCAAAGATGTAGGAGAATTGGCATTTTAAAGTAACAGATGATCTCACCTTTAACATTGCCATATTTCATTGTCCTTGCTTTTTATCCCTTTGATTTTCTTTCTTTCTCAG
Seq C2 exon
TCCAACCCCTGCCATAATGGAGGTGTCTGCCACTCCCTGTGGGATGACTTCTCCTGCTCCTGCCCTACAAACACTTCGGGGAGAGCCTGCGACGAAGTTCAGTGGTGTCAGCTCAGCCCATGTCCTCCCATTGCAGAATGCCAGCTGGTCCCTCAAGGGTTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903:ENSRNOT00000032122:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=WD(100=64.5),PF0000822=EGF=PU(3.3=0.5)
A:
NA
C2:
PF0000822=EGF=PD(90.0=48.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]