RnoINT0044340 @ rn6
Intron Retention
Gene
ENSRNOG00000029179 | Cyp2d1
Description
cytochrome P450, family 2, subfamily d, polypeptide 1 [Source:RGD Symbol;Acc:708427]
Coordinates
chr7:123635724-123636181:-
Coord C1 exon
chr7:123636005-123636181
Coord A exon
chr7:123635866-123636004
Coord C2 exon
chr7:123635724-123635865
Length
139 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATTGCCTCATTCTGGCCCAGGCC
3' ss Score
6.27
Exon sequences
Seq C1 exon
GTTTTGAACATGTTCCCAGTTCTCCTGCGCATCCCAGGGTTAGCTGACAAAGTCTTCCCTGGGCAAAAGACATTTCTCACCATGGTGGATAACCTGGTGACTGAGCACAAGAAGACTTGGGACCCTGACCAGCCACCTCGAGACCTGACTGATGCCTTTCTGGCTGAGATAGAGAAG
Seq A exon
GTGAGAGACTATGGACTATGTGTCCATGCTGTTGTCGATAACCCAGTGACACTCAAGTGTCACCACCTGGAGTCATCAGGATGGTATCATGGTGGCTGTCCACTCCCTGCACTGAGTCTATTGCCTCATTCTGGCCCAG
Seq C2 exon
GCCAAGGGGAACCCTGAGAGTAGTTTCAATGATGCAAATCTACGTCTGGTGGTCAATGACCTGTTTGGTGCTGGGATGGTGACTACTTCTATCACTCTAACCTGGGCCCTGCTGCTCATGATCCTGCATCCGGATGTGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029179:ENSRNOT00000044470:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAAAGTCTTCCCTGGGC
R:
CAGGGCCCAGGTTAGAGTGAT
Band lengths:
245-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]