RnoINT0044353 @ rn6
Intron Retention
Gene
ENSRNOG00000032261 | Cyp2d4
Description
cytochrome P450, family 2, subfamily d, polypeptide 4 [Source:RGD Symbol;Acc:620640]
Coordinates
chr7:123600596-123601097:-
Coord C1 exon
chr7:123600921-123601097
Coord A exon
chr7:123600738-123600920
Coord C2 exon
chr7:123600596-123600737
Length
183 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
CTTCCTTTCTGCCTGGCCAGGCC
3' ss Score
8.44
Exon sequences
Seq C1 exon
CTCCTGAATGTGTTCCCGATGCTCCTACACATCCCAGGGCTTCTTGGCAAGGTATTCTCTGGAAAGAAGGCCTTCGTTGCCATGCTGGACGAGCTGCTAACTGAACACAAGGTGACCTGGGACCCTGCGCAGCCACCCCGAGATCTGACTGATGCCTTCCTGGCTGAGGTGGAGAAG
Seq A exon
GTGATTGGCAGCTCCAAGAGATGTAGCCGGAAGCTATGGGCTGAGGTCCTGTGAGCTGTGAGGCCAGATGGGTAGGGTCCTGTGTATCACCAAGTGACTCATGCCCTGGGCTGCCCTGAGGACAATGGGAGGCCATGGTGGGACTTCCTCTCCCTACTGAGCCCTTCCTTTCTGCCTGGCCAG
Seq C2 exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAGAACCTGCGTGTGGTGGTGGCTGACCTGTTCATGGCGGGGATGGTGACCACCTCCACCACACTGACCTGGGCCCTGCTGTTCATGATCCTGCGTCCAGATGTGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032261:ENSRNOT00000011880:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGAAGGCCTTCGTTGC
R:
GACGCAGGATCATGAACAGCA
Band lengths:
248-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]