RnoINT0044419 @ rn6
Intron Retention
Gene
ENSRNOG00000020743 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:RGD Symbol;Acc:1306078]
Coordinates
chr1:82596633-82598979:-
Coord C1 exon
chr1:82598792-82598979
Coord A exon
chr1:82596775-82598791
Coord C2 exon
chr1:82596633-82596774
Length
2017 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GCTTTCACCTGTCTCCTCAGGGC
3' ss Score
10.48
Exon sequences
Seq C1 exon
AGCGTGTTCGGGAGGAGCTGATCCAGGAGCTGGGTCCCAGCAGGACTCCAAGTCTCAGCGATCGAGTTCGCCTCCCTTACACGGATGCTGTTTTACACGAGGCACAGCGGCTCCTGGCCCTGGTACCCATGGGAATGCCCCACACCGTCACGAAGACCACTTCCTTCAGAGGATATACTCTGCCCAAG
Seq A exon
GTAGGTGTATGGCACGGCCAGAGCAATTACCTCTGCCCTGGGACTTGCCTTTGGATGTCTCTGCCTCTGTCTGGTCCACCCCTTTCTCTCCCGCCTCCATTGAAAAACAGTTCAGAATAGAACCACCAGGGGGCGACATACCTCCAATCCTGAGAGAACAGCAGCGGCTCCTTCTGGAATCAAATCCTTATGCTAGTTAGCCCTGTTATTTTCTAGCTGGAACTTGAACAAATTGCTTCATCCGCTGAGCTTCAAAATACCCCTCTTCTAAATTAGGAATAACGATACTAATAGTCATTCGGACTTGTAAAATAATGCTTGAAAAACATCTACCCAGCTCTTGATGGTGGATGGGTGCCCATGTACACACAGAGGACAGCCACAATGTCATAATAAACACCTTACATCGTGTCAGCCATTGTTCTGGATGCTTTCTGTTAGCGTCATTTTCTTTCATCTGCAAAACAATCCTATGCAGTCATCACACCCATTTTACAGATGGCAGAACTAAGAGGTGTGCACCCAGCCAGAGAGTGGGAAGACAAGATTTGAACCCAGGACCTAAGCTTTAATCACTTCAACCTTTCTTTCTGTTACTTAGTAACAGTTCCATGATCCTTTTCCGGGAGCTCCTTAACCTTCACAGCTCACATGCCAGGGGCCAGACTTTGTAGCAAATCACACTTTGCCCCTCTGCTCTGACTCCTCCGCCTGCCTTCACCCTCTCCCATGACAGCCCCAAGAATACACAAGCTCTGGTCTGGCCCGAGGGACTGCAGCCCTCCCTGCCTGTCCCTTCTTGGACATCCCTCCCACACATACTCTTGTCTTGCCTCCCTGCGACATTCCCCAGAGAGGTGACTTCGTACAGCCACAATTTAATCTCGAGATCACAACAGACTCCCAGAATCTCAAAACAGTATAAAAATAGCACACTTTGCCAGTCTCCCCTAGGGGTTTCTTTGGCTACTGCTTAAGTTCTCTAGGCCTTAGTTTCTCCCATTTTTTTCATAGTCCTCCCTTCACCCTATAAGATACTAGGGGTGAACCCAGGACCTCTTACACATTAAGCAAATGTTCTACCACCAACTTACATCCTAGACGCACACCCTTGTGGAGGTTTGTTTGGATGGTTGGTTTTTTTTATTTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTCCCCTGATTTTTCTTTTGAAATATGATCATTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGCGCAGGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAATAACAAACAAACAAACAAACAAAAAACAAGGAAATATGATCTTTTTAAATAGCATGGGCTGGCCTTGAACTTGCAATCTTGCCTCCTTCCTATCTCAGCCTCCAGGCTCGTGCCATTACACCCAGACTCTCCGTCTTTAAATTGGGCTTCTCCTTCCTGAGCTTAACTCCAGAGACTCAAGGTGTGAGGACAGGACAGGACTGTGTCCGTGTGAGCCTGTTACATACAAGGCAGTGGGTGTGAATGTGAAAGAAAACGCTTGGTTATCCCAGTGTGGTAACACAACACCTGCTATGTCACCACTGAGAAACTGAGGCAGGAGAATTGCTGCCAGTTCAAGGCTAGCTTGGGATGCATAGTGACACCAGGCCTAGAACGAAAGTAGGAGCAAACGGGAGAAGAGAGAGAAAGGCACAGAAGTGGTTATTTAAAAAAGAATGCACAGTGCTGTGGCTGAGGACCCAAGTTTCGTTCTCAGCATCCATGTTGGGTGGCTCACAGCTGCCGGTAACTCCAGCTCCAGGGGGACACGACGCTTCTGCACCTACAAGGATTCATATGCACATACACACACTCTGACACACATGCATAAAATTTAAAAAAAAAACAACTAAATACCTATAAATCTTTTCTTTAAAAAATAACTTAATTTTTAATCCAGTTATTTTAAGAGTATACATGGAGAACACCCAACTGTGTGAGCTTTCACCTGTCTCCTCAG
Seq C2 exon
GGCACTGAGGTCTTTCCTCTGATTGGCTCCGTACTGCACGACCCTGCGGTTTTCCGGAACCCGGAAGAGTTCCATCCAAGCCGCTTCCTGGACGACGACGGTCGGATTAGAAAACACGAAGCCTTCCTGCCCTACTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020743:ENSRNOT00000028177:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]