RnoINT0044427 @ rn6
Intron Retention
Gene
ENSRNOG00000028891 | Cyp2t1
Description
cytochrome P450, family 2, subfamily t, polypeptide 1 [Source:RGD Symbol;Acc:620086]
Coordinates
chr1:83966821-83967297:+
Coord C1 exon
chr1:83966821-83966890
Coord A exon
chr1:83966891-83967136
Coord C2 exon
chr1:83967137-83967297
Length
246 bp
Sequences
Splice sites
5' ss Seq
TGGGTGCGG
5' ss Score
3.47
3' ss Seq
AGAGCTGCTCTCACCCCCAGGAG
3' ss Score
7.89
Exon sequences
Seq C1 exon
ACGAGTACCATTGAGGAGCGCATCCTGGAGGAGACCGCATGTGTGCTGGACGAATTTCAAGCCACCATGG
Seq A exon
GTGCGGTCTGACAGGGAAAGCATAAGTACCTGGTTTGGGGGGAATGACTATGGACTGCCAAACCACTTTGGGTATAATGCAAATCCAACGGAGCTATGTGGAGGAGGGACCACCGCTTGTGTGTGAGGTTGTCAAACCATCTTATTCAGAGATTTGAGGGTGGGGGTCTCTCTCCTCTGCAGATCTTACTAAAGTGGTTACTTTTGGGGGAGCAACTTTATTACTCAGAGCTGCTCTCACCCCCAG
Seq C2 exon
GAGCTCCATTTGACCCTCGGCGGCTACTGGACAACGCTGTATCCAACGTCATTTGTACTGTGGTCTTCGGAAAGCGCTACAACTATGGAGACCCAGAGTTCCTGAGGCTCCTGGACCTCTTCAGTGACAATTTCCGTATCATGAGTTCCCGATGGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028891:ENSRNOT00000068322:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCATTGAGGAGCGCATC
R:
CCATCGGGAACTCATGATACGG
Band lengths:
222-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]