RnoINT0044433 @ rn6
Intron Retention
Gene
ENSRNOG00000011053 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:RGD Symbol;Acc:1309433]
Coordinates
chr2:236414135-236416587:-
Coord C1 exon
chr2:236416283-236416587
Coord A exon
chr2:236414469-236416282
Coord C2 exon
chr2:236414135-236414468
Length
1814 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TCTGGCCTTCACGTTTGCAGGCC
3' ss Score
9.24
Exon sequences
Seq C1 exon
GGAAGCGGGTGTGTATGGGAGAGCAGCTGGCCAAGATGGAGCTATTCCTGATGTTTGTGAGCCTGATGCAGAGTTTCACCTTTGCTTTACCTGAGGGCTCCGAGAAGCCCATCATGACCGGCAGATTTGGTCTAACATTGGCCCCACATCCCTTTAATGTAACCGTCTCAAAGAGATGAAGAAACCGCGAGGAGTAAGGAGGGAGCCGGCTCCACGTACCCGTCCCACACAGTCTTCCTGTTGCTCTTGAACATGGGCCAAGCAGTTCCGCAGCCGGGAGAGGCTCCAGACGAGAGACCCAGAGG
Seq A exon
GTAAGGGTGCCACACGTGGAGGCCTCCTCCGCAGGGTCCTCGAGTGGCTGGTGGTGTCCACTGTCCACGGGGAAGCGTGGACACTCAATTTAGTTGTATGGGTCCTATCGGGAAGCAGAGCTTCTCACCTCTCAGCCTTCGTCATCACGTGGTAAAATGAGTTAATGAAATTTCTCTCAACTCTGAGGAGAACCAAATGCTTCGTGACGTCTGTGCTGTGGGTGGATGCTGGGCAGTTCGGTAGCTCTGCCTTCAGACCTCCCAAGGCCCCTGACAACAATGAAGTATCATCATGGACACTTGGTCAGAGAGGGATGCAGGTCTAGGTTATATTGAGGAGACATTTTTCTTTGTGCGTTTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCCTAGATTCAATGTCAGTTTCTTTGGGCTTGTGTCTTACGAGTATCATTTTTGTTTAGGGATGGGTCCTTTTTATAGAGCTAAGATGGATGTCCCCTTGCCCTGTATGTTGAGGAAAAAGAAAAGCATCCTCTTGAGCTTATTGTCCACATGTGTCTACTGTCTTTAGCCACATGAGCGGTGAGCCAGGCTGCACAGCACAGGTCTGCCCTGCTCAGGTGAGTGCAGAGCCCCTAATCAGGGCCTGGATGCTGGGCCGGGACTGTAATAGAATTGTGGACCTGGCCCAGAAGGGACTTCTCATTCAAGTGATTCAGAACCTCCTCTCCTGCCGTGCCATCAGCCATTGTGTGACTGACTTACTCTGCAAGACAAGAAGCCATTTCGTGATAAGAGGGCCCTCTAGTGGCTCCTCCAAGGACCACTGGGAATGGGAGAATGCACTTCTCATAATGGTGGAGGACTGCACAGCCAACAGTGTGCTTCTCAGTGTGCCTGTGTCCGGCCCCTCCCTCGGGTCTCCCTGCTCTGAAGGAGCCGTGGTAATGCTGAGACTTTCTTAGAAGAGCCTGCCCCGGATTCGTTTGTGTGCCTGAAATCCTCACACTGAGGAGCTGAGATTTCCAATGCCAAGGTCCATAATTAGAAAGTGCCACCGTCACTGGGTCTCTAAGCTACTTGGCCTTGTGACTGGAAAGCACTTTCTGATCCCCTTCCCAGTATTGCCCCACATGGCCTCCGTTACCTGTGCCCCTCTTTGTCCCAGTTGATTCCTTGGGGCAGGCTCCACGCTGCCTCCTCACCATGCCTGATTCTTGGTGGATGCCCAGGTAACTTAGGAGTGAGTTGGGGAAAGCGATTAAGGGGAAAAGCCTGCCCAGGCTTTATTACAGTCTGTTCAAGATAGCTTCAAAACACAGCATTATGTGTCCTACTTGACTAAGCAAACCAGTGTTCAAAAATGCACTCGACTTTTGTTTATCATTTAAAGTAATCATTTTAGGCAAATTTAAGATGGTGCCTTGGCTGCCAAAACAATACAGAATGAAAGCTTCCGGCAGCTGCCTGCTGTCTGCACACAGGCGCTTGCTGGGCTAGCCAGACAGACTCTTAAATGCTTACTGCAGGAAAATAGCAGCTGCCGAATAAAAATCTAATATGAGGACAAGGGGAAATGGACATTGTATAACCAAGTACTGATTAACTTTGAGTCTGTATTCTTTATGTCATCCACATTGGTGTTTTCTTTTTCATAAATTACTTTACAACAGATGTTGTACAGGCTAATCTTTAGGTTCCCTGAGCGCTGGTGTCTAGGCCGAGATGCTGAAGTAGGGTAGCTGAGGTGCATGAATGGTGACACTGCTCGCTGAGCAGGTGGTCTGTCCTGATCTGGCCTTCACGTTTGCAG
Seq C2 exon
GCCCCCCTACTCTCTGACTCGCACATGGATCTCTGGACCTACTAACCAAAGATTTCACATCATACTTGAAGAAGCCTCTGCCTTCTCTGAGACGACATCAGAATCCCACGATTATCCGGCAGTGTAACACCGTGCCTCAAGCTGGTGAAAACCCCTTTCCACACGCTGCCACAGAGGGACTGCACGTCTTCCCAGCCGACTGCTATTTGAAGACTTTGCACTTCCTGTCCCATCTGAAATGTGAAATTAACTGTGGTCAGTTTTCTAATAACGAGGTCTGGACTTCGTCTGTACTGGAGCTCTTGGTGCTCCTATTAAACCTCTTATTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011053:ENSRNOT00000055570:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(12.0=91.7)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCTGAGGGCTCCGAGAAG
R:
ACTGCCGGATAATCGTGGGAT
Band lengths:
342-2156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]