RnoINT0044515 @ rn6
Intron Retention
Gene
ENSRNOG00000030154 | Cyp4a2
Description
cytochrome P450, family 4, subfamily a, polypeptide 2 [Source:RGD Symbol;Acc:2479]
Coordinates
chr5:134196912-134197689:-
Coord C1 exon
chr5:134197493-134197689
Coord A exon
chr5:134197370-134197492
Coord C2 exon
chr5:134196912-134197369
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
3' ss Seq
TTTTGCCCTCATTTCTGTAGCTT
3' ss Score
8.75
Exon sequences
Seq C1 exon
GAACTGCATTGGGAAACAATTTGCCATGAATGAGCTGAAGGTAGCTGTGGCCCTGACCCTGCTTCGCTTTGAGTTGCTGCCAGATCCCACCAGGATCCCGGTCCCCATGCCAAGACTTGTGTTGAAGTCCAAGAATGGGATCCACCTGCGTCTCAAGAAGCTAAGATAATTCTGGTGGAGATAGGACAGCTCCAAAG
Seq A exon
GTCTGCTGCCTGCAATACCTGCTTTTTGTTCCTGGCTAATTTATACTCATTTTGCTTTCTCTTTGATTCCCATCCTTCTGCTGAGTGTCCCGCCAACTCATCTTTTTGCCCTCATTTCTGTAG
Seq C2 exon
CTTTTACTCCAGACACCTTCCCAGCTTGTGTGTGTACCCATTTCCCATCTGGTTTCACCTCTGACCAGCCACTGAACCTGCCGCCAGCAGCCCGTCCTCCAGCCTGCTTACCCATCATCATCATTGGACTAACAGAGAAAGATGTATTTTAGAGGGAAACTCTTGCACTTTATCTCCCTTCAGTTCTCAGAGTCTTGGGACAATCGGCATCATGAATTAAAATGTTCTTAGATATCACATGCTGGGAGAAAATTAATCCTAAAGATTCTGGCACCAGCCAGAGGAAGGAAGGTGACTCAAAAGAAGAGATTTCTAGATATTTCTGATTGTCTCATGGTGAAATTAATGTATGCCTCATCTTTTCTATGAAATAATAGTACTGATGCAGAACAGTAGATAGAAATGAATAGTTTTTACTACTTTGGGCCAAACTGTAAATAAATCCATTTCACTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030154:ENSRNOT00000051252:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(11.2=87.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGTTGCTGCCAGATCCC
R:
GATGATGGGTAAGCAGGCTGG
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]