RnoINT0044555 @ rn6
Intron Retention
Gene
ENSRNOG00000062306 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:RGD Symbol;Acc:1561655]
Coordinates
chr7:14529483-14536979:+
Coord C1 exon
chr7:14529483-14529680
Coord A exon
chr7:14529681-14536834
Coord C2 exon
chr7:14536835-14536979
Length
7154 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TCAACCTTCTCCATCTGCAGGTC
3' ss Score
11.56
Exon sequences
Seq C1 exon
ATGCTACAGCTGAGCCTGTCCTGGCTGGGCCGGGGGCCAGTGACTGTCTCCCCATGGCAGCTTCTGCTGGTGGTTGGGACCTCCTTGCTTCTGGCTCGAATTCTGGCCTGGATCAGTGCTTTCTATGACAACTACTGCCGTCTCCGCTGCTTCCCTCAGCCCCCTTCACGGCACTGGTTTTGGGGTCACTTGAACTTG
Seq A exon
GTGAGTGTGGTAGCAGGTAGGTCTGGTGTGTCAGGATGAACGTTCTCAAAGGGTCGGGAAAGGCTCTTAGGAACCTGGGAGTCACGAGAGGGCCAGGGGCCCACAACAGAGGAGAGGTGAGGGAGGCTGAATCAGCCCTTTTCTATTCACATACCCTGCAGATCTACTGGCCTCCCTATACCACCTTTTGAGGCCCCCCCGCACCCCCTGCCAGCCCTCCACCCCCCCCCCCCCGCTTTCTTATACCCAGTTAACTTTGGATCACGCTCTTATCAGAACTCATGTTTTGAGTCTTCCTGTCGTGTGTTCAGTCCTGTTCTGTTGTTAGATCCCCCTACCTCAGCCCAGGACGGGTTGCAGAGAGCAGAGCCCGGCTACCCGCGCCTGTGCTCTCTTCCTTTTCTATCGTTGGATTTGAGGCTTTCTAGTAGAACGAATCGGGTATGCTCCTTTCCTAACCCATCTCGTTGGCCTCAGGCCAGTGTCTGTACCTGTGGGGATCAGCTCTGATTTCTCCCACCGCAGGGATCCCGAATGGCAGAAGATGCCATCTCTCCTCTCCAAGTCTGTAGGCCCTGTCCTTTCTATTTCTTTTTTTTTTAATAGAAGATTTATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCCAATCTCATTACAGATGGTTGTGAGACACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCCTTTCTATTTCTTTAAAAATAAAATTTATTTGTTTAGTTTTATGTGCATCTTGCCAACATGTGCGCTTGTACACCTGTTGCTCAGAGAGGTCAGAAGAAGGCATTGGATCCCCGGGAACTGGAGCTACAGGTAGTTGTGAGTTACCCTGTAGGTCCTCGAAATCAAAACCAGGTCCTCTCCAAGATCACCAAATGCTCTCAACCTCTGGACCATCTCTCCAGCCCCACCTACTCCCTGTCCTTTCTTATCTAGTTCTTCATCTTCAAAAGGTGTCAGAGGACTCCGCCATCTGAGTTAGGTCAGAGTTGAGCCCTCTGTTTTCCTCTGTGGTGTTGAGATGAAACACTGACTGTCTCCTGCTCCCTAGGAAATGAAGGATTCTGTTACTAGACCATTACTTTTCCTGTTTTTCTAGAGGGCGCCACCGTGGACTCTCTTATAATGGCTACATATCCTGGAAAGGCTCCTTGTTCATATCCAGTACCCCTTGCTCCATGCCTTCCTACTGCCGGAGCCACATTTGGTACTTTGGTGTCACCTATGAGGCCTGGATTCAAGTGCTGCTTTCTCTCCATAGCCTTCTGTTCTTCCAGCTTCCCTCTTGGCCTTCTCTCCTCTCATATCTCCTCAGGACCTCCTCCTCCTCTCTCCCAGAGCAGGAGCTTCCTTCCAATTACTCTGCATTAGGAAGGGTTTTCCAGATTAACAGGCCATGTGCATGTTACCATTGTTACCAGAATGGTGCACAGCCAGTGGGCTGGAGAATTCAGTCATGACTCTCTGAATGTTGGCAAGGCTGAGGACCCAGTAGCTACTCAGACCACAATGGATGCCTCAGCAGTTCTAACCTGTTGCTGAAGGCCTGCCTGGATGAATCGTGGAGAGTTTCTGATCTCCCATCGGAAGCTGAGTTCTGATGAAGAAGAGACACACTCACTGTCAGGAAGTGAAGGCCCAGGGCCCACAAAGTAGGTTTGACCTCAGACTTCTTTATATCTTGGCTACCTGCCAGAAGGCAGCGCCCATCAACAGGGAGGGTCTTCTCTTCAGTTCATCTTTCCAGGAGATTCCCTCACAAGATCACCCAGACGAATTTCTCTTAGTTAATTCCAGATCCTGCCAAGTTGGCAGTGAAGACTGATCACCCGAAACCCACTTGTTGTCAACCTGACACGCAGCTTTATCTCCCGTGTCACGCTGAACCATCAAATGAAGATAATAATAGAGTTTCAACTCCACTTCACATGATCTAAGTATCACACAAAGGACTCTACTATTCCTTTCCCTAGAGTAGATGGCAGAGCCACTTGAGGAATGCCTAACCACTGATGTTATTCCAACCACTGTTCCGTTAGTTACATGGTAAAGCAATAGGAGAAAAAGAAAGCCAAATATCTGTGCACTTGTACAAAGCATATCCTTAAAACAGAACAGAGACACTCAAGATAATTATAATAATCTTAGGTGGTAATTTTTTAAAAGGTTTATTTATTTATCTTATGTATGTGAGTACACTGTTGCCATCTCAGACACACCAGACGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCACGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCGTCTCTCCAGCCCTTAGCTGGTATTTTTAACTGCTTTCCTCAACTACACATTCTGTATTTCTTCTACCCTCAGCAAACATATCTTAAGGTCTTGGCTCTTTTTCTGGAAGGATGAACTTCATCCCCGATGAACTATTATCATTCTGCCTAGATTGCATTGTTAGAGTTTCCTATTGCTCTTAACCACAGAACATGGTAACAAGAGATGCCCTGAAAGGACTTCTGCACTCCATGTAGATGCAGTGTTTCATCTCAACACCACAGAGGAAAACAGAGTTCACAACTTTGACCTAACTCGGACAATGGAGATTTCTGACACACTCTTCCGTCTATTGTAGAGAAGCAGGCCCACTTTTCCTCTGGGCATTTTGGATTAGTTACACCTTAGCCTGTTGATTCAAGGGAATAAGAACTCAACATGGCTGAAGGGAAGGCTTAGCTTCTGACTCAATGGAGTATTTAGTATATCTCTTGGCAGAAGCAGCTTCCCATTTGGAACCAAGCCTTGTAAGTTAGTAGAAGATAAGTTTGTGAGAACAAGGAAGAAAAATTTTGCCAGTGGGTCCCTAGAGGTGATTAGGTATGGCACCATTCTCATTTCCGCCCCTGGCTTAATTTTTGAACTGTAAATCCTGGTTATAGGAGGATATCTGTACCATATATTGTACACAGATTCAGAGCATATCTAGCCTTCTGGAAAACTTGTTCAGCTATCTGAGTTATTTCCACCTATTGACACAGTAGATGTCCTTTTAAAAGGCCATTCCACTCTTTCGAGCCATCTGCTTCAGGATGGTGGGAGATGGTTAGACCACCGAATTCCACAAACATGAACCCACTACCTTCACTTCAGTGGCCGTGAAATGAGTTCCTTCATTAGCTCAAAATTATGTGAGATGCCATGATGGTGGATAAAGAATTCTTTAAATGGATAGGTGATCATTTTGTCAGAGGCGTTACATGCAGGAAAAGGCAAATTCATAATTAGACTGTTTCAGTAGGGAAAGTGCACATCCACTCCACGATGGGAGTGGTCTAAGGTAGTCAACCTTAGTAGCCACCTTGGGTCACTGGCTGGTCTCCCCGGGAAATGGTTCCATATTGGAGGCTCAGTGTTTTTCTCTGTTAGTGGAAGATCTGGCACTCAATGGTAGCCATAAGTAGATGAGCCTTGGTGAGTGGAAGCCTGTGTTGTTGAGCCTATGTATGACTTCCATCCTTGTCTCCTTGGCCACTTTGGTCATAGACCCACAGGTCAATGTCAGGGATAGCTGGGAAAAGATATTAACTATAATCCATAGTACAGGTACCCTATCTACTTGATTACTGAAGTAAGTCTACCTCTGCTGAGATCACAAGGGTCACAGTTTTTTAATAACACTCCTTTTAGGCAACCTGCCATGCAGCCAAACCATTTGACCCAAGAAACAGCATATAGTCACAGGTTTGATCATCTCCTTTCCCAAGCTAAAACATGACTCTACACACTTGTAGTGTCCTTTAGGGTTGTTGGAGAAAAGCTATAAAGTTGCACCTGTCCTTTTTTGGGTGGTGCCTGTGTAGCATGTGGAAACATTTGTAAATGCCTAGTCTTCTGTTTAACAGATCATAGGGCACACTTCATAAGACTGTAGGTGCATGCTTAGGAATAGAAGGTGTTGTAGCAGGAGTAGGAACCATAGGTATTTTGGAATCTTTAGTAATTTGCTGTGCTTTCATTACCCGTGTAGACTTGGTTCCATACATATATACATATACATATACACATTACACATAAGTACACACATATACATGCACGCACACACACACAGACACACAAACACATATTCCAGACCTCTTGTTATATGGAACAGAAACCACGGGTTCTTTAAGAGTGTTGTGTGCCTTTTCACCTTGTATTCCATTTCTGGGACCTGCTGAGACTTGAGTCTGGTGGTGAGGGTAGAGCCCAGTTGGCATCAGAGAAGTCTTGCTTGGCATCTCTTTCAGGAAGGCCATTCTTGGTTTCATAGACAATACAGTATTAACTTTTTCAAACAAAGGTGGAGAGGGAAATAGTTCAGGGAGTGGGGTTGGGTGTACATTTGCTATTAAATGTGGGATGACATCTTCCTTGGCTAAAAGATTTTGAGAGTTCTGTTCTCTCAGGTCTTCTGTGCACCTCCATCCCAAGTTACAGGACCTTACTCTTTACCAAACTGTGTCCTCCCATTGATCGTTGATGCACTTTGACATAAAGTTACATCATAAGTCATTCAGTCTTATGACAAAGGCTTGTGTTTGGCTTTCAGAATCTTCAGGCCTATGGTTGCTCAAGATAAGATTCTCTCTTAGGGCCAGGTGGTAGTGGCTCATGTCTTTAATCCCAGCACTCAAGAGGCAGAAGCAGGTGGATTTCTATGAGTTTGAGGCTAGCCTGGTCTACAGAGTGCTCAACACGCTGCTAGACAAGAAAGGCTACATGGAGAAACCCTGTCTTGAAACAAACAAACAAACAACCAAAACAAGAAGAATAACGACAAGAACAAGAACAACAGATTCTCTCCTAGGACACACTTCTAAGCTTTTAGATAATCTGTGTAGAACTGGAGCTGGAAAGTTAAACTCATTTAATTTTTTTTTCCCGGAGCTGGGGATCGAACCCAGGGCCTTGCACCCGCTAGGCAAGCACTCTACCGCTGAGCTAAATCCCCAACCCCAACTCATTTAATTTTTATTTGCTATTTTATCCAGAAACATTGAACCCAACCAGCCAGCATCATTAGATTACTGACTTCCCAGACGTGTTAAAAAGTTTTTTTTTTCTCTTCTTTTTTTCGGAGCTGAGGACCGAACCCAGGACCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGTTAAAAAGTTTTAAATAGAGAATCATTACCTCTCTTGCTCCTCACAGTGGGTGAAATCAGGAATATTGAGTGCATTTATTTTGCATAGTTTTCAAGCAGTTCACCCCATTGGTTATTAGTGTTTTCTAGACCACCAAGCCTTCATTAATGGTAGTAGTTATTTTCTGTCTCTGTGATAAAACAGCATGGCCAAAAGCAACTTAAGGAAAGTTCCAGGGGAAGTAGCATCCATCATAGTGGGGAAGGCATGATAGGAGGAGCAGGGACCAAAATGCTCACATTACATCCATAACTAGGGAGGAAGGGAGGAAAGGTTCTATAACTTCCTACTGGTGATCTAGTGTTCCCAGAAATGAACTTTGGTTTTGTCAAATTGCAGAGTTAGTGTCAGATTCCAATAACCCACTAGACAGAAATATCCTTATAATTCTCTTTCCTTAGAACCACTCCTGGCAGCACAATTTGCATTAGTCAGGGTTCTCTATAGGAATAGACTCAATACAAAGTATTTATATTCTAAAAGGAACTTACTGGGATGACTTCCAAGTAGTTGGAGCTGGGTAGGTCACCAATGGCTGTCCAGCTCCTACATTGGCCATGCCATCCGTTCCCTCCTATTCACACTTCCCTTCGCATCTGGGGATAACGCTGTTGGTGTCTTGAAGCATCCTTTGCTACACAGCTGCAGAGAAACTTAACCAGTGATGGGTTACAATTTGCTGAGTTCACACTGAGTTCACATGAGTGGTGAGGAGAGCAGATATCGGAAGAACTGGATGCAAAGAATCTGATAAAGACATACAGAGAGGCATGCAGAGGGAGGTGTCAGAGGAAGAGAGGGAGAGCAGGAGAGATAAGGACAGAGAATGATAGACACAGAGAAACAAATGGGACAGATAATTTGTGCTGAAATAGATACACTCATACATTTATTTAATATCTAACATATTTTGCCTCTATCATTTATTTATTATGTATCCCTGTGGCATTTACTTAACTACTAAGTATAACATTTATAAATCATTTGTATATTCATATTATCCATCAATCATCTGTCTATCCATCCATCCAACCATCCACCCCATCCATCCATCCACCCACCCACCCATCCATCCATCCACCCATCCACCCACCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCACCCACCCACCCATCCATCCATCCACCCATCCACCCACCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCACCCACCCATCCATCCCATCCATCCATCCATCCATCCACCCACCCATCCATCCATCCACCCATCCACCCATCCACCCACCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCAGGAAATAGAGGTTGGAGAGATGGCTCAGTGGTTAAGATCACTTGCGCTCTTAAAAGAACCTGGCTTCAGAGCCTAGCACCCACACCAGGAAACTGACAACTGACTACCTGGACTTCCAGGGGACCCAACACTTTCTTCTGTCCTCCATGAGCATCTGCATAAAATGTATAGACACACACACATATACAAATAATAAATCAATAAATCTTAAAAAAAAAAACCAGAGATAGGAGAATAGGCCTCAAAGAGATGTGTAAATAGATACATTAATATAGAAGTGATGTGCATAGTTTAATCCACATTGATTCGGCAAGAGCCGTAAATGAATGAGCCAATTAGAAGCGTTGGAGTGGTGTGGGATTTGATTGGCGAGAGAGTGGGAACCTAGAGCCACCCTCTCAGGATGAACCTCAACCTTCTCCATCTGCAG
Seq C2 exon
GTCAAGAACAATGAAGAAGGCCTGCAGTTGTTGGCTGAAATGAGCCACCAGTTCCAGGATATCCACCTCTGTTGGATTGGGATCTTCTACCCCATCCTGAGGCTTATCCACCCCAAGTTTATTGGCCCCATACTCCAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062306:ENSRNOT00000060284:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=21.2)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]