RnoINT0044562 @ rn6
Intron Retention
Gene
ENSRNOG00000062306 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:RGD Symbol;Acc:1561655]
Coordinates
chr7:14540416-14541065:+
Coord C1 exon
chr7:14540416-14540686
Coord A exon
chr7:14540687-14540998
Coord C2 exon
chr7:14540999-14541065
Length
312 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GTTCTGGTTTTTGTCTCCAGGAT
3' ss Score
9.58
Exon sequences
Seq C1 exon
GTCTCCCAGTGAATACATAGCTGCTATTCAGGAGCTCAGCTCCCTCATAGTGAAACGGCATCACCAGCCCTTCCTGTACATGGACTTCCTGTATTACCTCACTGCTGATGGGCGGCGCTTCCGCAAGGCCTGCGACCTGGTGCACAACTTCACGGATGCTGTCATCAGGGAGAGACGTCGCACCCTCTCCAGCCAAAGCGTTGATGAGTTCCTGAAGTCTAAGACTAAGTCTAAGACTTTGGACTTCATTGATGTGCTCTTGCTGGCCAAG
Seq A exon
GTGGGCTTATGTGAACTGAGACCTTAACCAAGAACGCTGACATTAAATGTCAGATAGACGTTAGACTTGATCAAGAGGAAGCAATAGATGGTGTTTATAGTCACTGAGGACAGGGTACAGAGACTTTTAGAGGTGACTGTTGGACACTGTATGAAGGAACAAACAACCTCAAACAATTGAGGAAGAAACTGCAGGGCAGACTGTGGAGTGGAGAGGGAAGATGTCCTGTGTGCCCAATGGGTATCAGAGCCTGTCTCAGATCTGGAGTTCTCAGACACGGAACGAGTTGACAGTTCTGGTTTTTGTCTCCAG
Seq C2 exon
GATGAACATGGAAAGGAGCTGTCAGATGAGGACATCCGGGCAGAGGCTGACACCTTCATGTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062306:ENSRNOT00000060284:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.4=100)
A:
NA
C2:
PF0006717=p450=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCCAGTGAATACATAGCTGC
R:
TCCAAACATGAAGGTGTCAGCC
Band lengths:
337-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]