RnoINT0046455 @ rn6
Intron Retention
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9971887-9973237:+
Coord C1 exon
chr9:9971887-9971936
Coord A exon
chr9:9971937-9973117
Coord C2 exon
chr9:9973118-9973237
Length
1181 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
CCAGAGTCTTTTACCCCCAGGGA
3' ss Score
5.63
Exon sequences
Seq C1 exon
GAGGCCATGCAGATGGTGCCCAGGTTCTGTTTCCCCTTCGACATAGAAAG
Seq A exon
GTATGCAGGGGACAGAGAGGTGGGGACACACACGCTCTTTGGGGCCTGAAGCAGGACCTTAACAACTAAAGCATTATAGGCACAGGGGCACAAGGACCCAGAGACCCAAGAACTGAAGGACAAAGGAAGCTAGGTGGTCCCTCAGAGGGACCTTCATGAGTGTGTATGTATGTTCATAGGTGAGCAGCTGCATGTGGAGGCCAGAGACAGACCTCAAGTGTCATTTTCCAGAAACCATCCACCTTTTTCTTTTGTTATGTGAGCTATCTTACTAGTCCTGAATTGGTTTGGTTTGGTTTTGTTTGAGTGTGTTGGAGTATGAGTGTTTTGCTTGGACATATATCTGTACACACCACATGATACCTGGTGCCTAGGGAGGTCAAAAGAGGGTATCAGACCACCAGGAACATGTGGATACTGGAAACGAAACTTGGGTTCCCTGTGAGAGCAGCTAGTGTTCTAACCACTGAACCATCTCTCCAGTTCCTATACACACTCCCCTTGTTTTTTGAGGCAGGATCTCTTACTGACTCAGAGGTCTCCAAGGAAGTTTTACTGGCCGGCCAGCCCCAGGGCTTTGAAGATTTTACCACCCCAGCTCTGGAGCCAGAATTAATTTTGTTCTATTGTATTTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATGGGGGATTATGTACCTGTGCCACAGGATCTGAGTCCAGGGTCAGAGAGGATAACTTGGTTCTCTTCTTCTACATTATGGGTCTGCAGAGATTGAAGTCACACTGTGCTCACATGTGCTCATACTGTGCTTACATGTGCTCACATGTGCTCACACTGTGCTGACATGTGCTTACATGTGCTCACATGTACTTACATGGCAAGCATATTTTCCTGATGAGCCACCCATGCTGGCCTCCAGATTTTCTTTTAAAGATGTGTCTGTAGAATGAGACTCCAGTCATCTGTCATGCAAGGCACATACTTACTGGTAGAGCTATGAAACCAGGCTCCAGGACTCAGGTTCCTGACTCCCAAGAACCCACAAAATACTGAGCTCTCATACCAAACCACCAAAAAGCTGCATTCACAGTCATCTTGGGGGTGACCAATCTCCACCAGAGTCTTTTACCCCCAG
Seq C2 exon
GGAGCCGCCCAGCCCTGCTGTCCAGCACTTTACCTTTGCCCTCACTGACCTGGTGGGCAACCGTAGATTTGGCTTCTGCCGCCTGCGAGCCGGTGCATGGAGCTGCCTCTGTATACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050:ENSRNOT00000075215:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(26.2=100)
A:
NA
C2:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(3.9=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]