RnoINT0048671 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145944915-145947179:-
Coord C1 exon
chr6:145947047-145947179
Coord A exon
chr6:145945043-145947046
Coord C2 exon
chr6:145944915-145945042
Length
2004 bp
Sequences
Splice sites
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
3' ss Seq
TGTCTGCTCCCACTTTGCAGGTC
3' ss Score
11.45
Exon sequences
Seq C1 exon
ATTTTGAGAACACTGAACAGAACATATGTTAACATGAAACAGAAGCCTGTTTGGAATGACTTAAACCCCAAGGCTGTGACAACGGATGAACTCTTTGGTTTCATTCATCATGCTACCCGAGAATGGAAAGATG
Seq A exon
GCAAGTGTTCTCCCTCTTTTGAAGTGCTGAAGATTCTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCTCTCTCTCATAGTCACAAATTGACAGTGCGTTATCATGATCAAAGTTGGGGCTGACAACAATGATCTGCTGAAAGCAAGGTTTAAGGAGCACTTGATTACATGTGACAGATTCTTGCTCAGTGCTGTGCATTTTACCCACACCAGTGATGGCAGGGGTCCTTAGAAACCAGGGAGAAATCAACACAAATGCTCCATTTCTAAAGTTCCTGATATGAGGCACTGGCTGAATTTAAGTGAGCATTACAGTATGGGGGACACTGATTGTATTCAGGCCTGCATCACAGTTGTTGGGCACAGAAGGCAGTGAGTCATGCTTCCTGCCTGGAGACTCTGGAATTGAAAACATTTTAGGCATAAATTTAGGGGTTTAGAATATTTGAGATACTTGATTTTGGGGTTAGGAATGTCCAGCCAGTGAACCCAATAAGAGTGGTAATATGCTTTGAAGTATGACTTGTCTGGTATTCTCCTCCTGCTTACCTTGGGGCCACTGCTGAGCTGACGGGTATGTTTTGCCACCGAGAGTCTGATTTTCTTGAAGGATCATGGCAGGGACAAAGTCATCAGCATTATATGGGAAACGTGTGAAGACGGCTTAGATTGAGAACCCTTAGAAAAGCTGGTGGCTTTCATGGTGTCTGATTTTACTAACCGCTGTTCCTTTGTTTTGGGTTTTGGGTTTTGTTTTTTATTGTTTTTTTTTTTTTGTTTCTTTGTTTGTTTGTTTGAGGCACAGTTTCTCTGTGTAACATCCCTGACTGCCCTGGAAATCCCTTTTTAGACCAGGTTGGCCTCAAACTCACAGAGATCTACCTGCCTCTGTCTCCCGAGCCCCGCCGTGGGTCTCTGTGAGTTCATAGAGGAATTCTCCATGTGTCCACTGACACATGTTTGCTCAGTGTGTTTTGCTAGAGTTGAAAAAGTCAGCCCCTATGGAATGCCCCCAGAATGCACAGCATTCAGATATGGGAAAACTGCAAACAAGACTGTAGAATGAGACACTTCTCCGCACCTCATGTCATGGCAGTCTGGCGTCACTCTCATGACTGCAAAGAAAATGGACAGCACTTTGTAGCATGGGCTTTCAAAATTTAAACTTTGAATAATGTAATAGGAAAAATAGAGGTGAAATATGGTAGGCAGTCTAAGATAGATACTGCACATATGTATGTGGAAGAGGATAATGTCTTACTGTACCTTTCTAGTCTGTGTTCATTACCATCTATAAACCTCAGAATGGGTCTTCAAGAAAGGCATTTTCCTCTCCTGGGAGGTGGAGCTTGCCTGTTAGTAAGTTGTAGAGCTAACAGGATCTGGAGCCCATCTAAGAGAGGTCAGAAAGGGGGCATCGTGTGCCACTTGTGAGAAAGAGGTAACAACTTCCTTTTTTTTTCTTTTTTAATTTACATTTCAAATGTTATCCCCTTTCCCAGTTTCCCAGTCCATAAGCCCCTTATCCCATCCCCCTACCCCTTTCTTCTATGAGGGTGTTCCCCCTCCCATCCACTCTGCCTCCCTGTCCTGACATTCCCCTATACTGGAAGGTCCAGCATTGTCAGGAGCAAGGGTTTCTCCTCCCATTAGTGCCCAACTAGGCCATCCTCCGCTACATATGCAGCAGACCCATGGCTTCAGCTGCATATGTAGCGGAGGATGGCCTAGTTGGTCTGTCCCATGGTGGTTTCGTTCCTGGGAGCTCTGGTTGGTTGGCATTGTTCTTATGGGATTGCAAACCCCTTCAGCTCCTTCAATCCTTTCTCTAATTCCTCCAACGGGGGTCCTGTTCTCAGTTCAATGGTTGGCTGTGAGCATCCGCCTCTTTATTTGTCATGCTCTAAGGGACTTCGAAGGAAAACATGTTTTAGAAACAAACAACCCTCGAATGCATTTGCATTGTCTGCTCCCACTTTGCAG
Seq C2 exon
GTCTCCTCTCGTCCATTCTGAGAGAGCAGGCAAATCTCACACATGATGGGCCAACCTGGATAGTCCTGGATGGTGATATTGACCCACTGTGGATCGAGTCCTTGAACACGGTCATGGATGATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.1=100)
A:
NA
C2:
PF077289=AAA_5=FE(30.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]