RnoINT0048848 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107032507-107032810:-
Coord C1 exon
chr10:107032628-107032810
Coord A exon
chr10:107032533-107032627
Coord C2 exon
chr10:107032507-107032532
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GGAGACAGCTTGGCAGGCAGGTG
3' ss Score
-6.81
Exon sequences
Seq C1 exon
GGTTACCATGAGTACATCGATGAGAACCTACCCCCCGAGAGTCCTTACCTGTACGGCCTGCACCCCAACGCAGAGATCGGTTTCCTGACAGTCACCTCGGAGAAGCTGTTCCGAACTGTCCTAGAGATGCAGCCCAAAGAGACAGACTCAGGAGCTGGCACGGGGGTGTCACGGGAGGAAAAG
Seq A exon
GTAGGGCCGTCCATGTCCCTGGCAACGGGGGTGGGCGGGGCCTAGAGCGGTGGGAGGCACAGTGCAGCCCCGGCTGGAGACAGCTTGGCAGGCAG
Seq C2 exon
GTGCGCTCTGTCCCCTGCTTTGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(1.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCTTACCTGTACGGCCT
R:
CAAAGCAGGGGACAGAGCG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]