RnoINT0048903 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56065268-56066813:-
Coord C1 exon
chr10:56066709-56066813
Coord A exon
chr10:56065457-56066708
Coord C2 exon
chr10:56065268-56065456
Length
1252 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGG
5' ss Score
3.71
3' ss Seq
AGTTCGAGGTCTCTTCCTAGGAG
3' ss Score
2.87
Exon sequences
Seq C1 exon
GACATGTTCCTGATGGCTGCCATGGGGCCTCCAGGGGGTGGACGGACTGTTATCTCCCCGAGGCTGCAGAGTCGCTTCAACATCATCAACATGACCTTCCCCACT
Seq A exon
GTGAGGCCCTGGGGGCTGGGGGAGGGACTGTACAGGGCTTACCATGGGGGACTAAGTCTTGAGCGGAGTTACAGGGAGCTGTGACACTTAGAGGCGGGACCCTCTGCGGAAGCCCTTGCATCTGAGCCAGGACAGCTGCAGGGCTTTCAAGCTTGACTGACCCAGCTCTGCAGTGTGGAGCCTCTGGTCTCCAGGGCCACATAGAGAACGCCTGGGATGGAAACAGACTCAGGCAGGTGGGCCTTCCAAAGCCGACAGCCGAAACCAGTGCCAGGGCTAGGGCAAGAGAGGATTAAAAATCAAAGTCAAGGAAAACAGAGGATATACATATATTTTAAAGTTTTTGAGACAAGATCTCAGTAAATCTACCCCAGAATGGCTTTAAACCCTTTCTACCTTAGCTTCCCAAATGCCAAGTTTACAGGTGAGTATCACTAACGTGTGTATCACTACACACTTGGCCTTTTCTGTTTTGTTTCTTGGGGGGACAGGATTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTGTGTAGACCAGGCTGGCCTCGAATCCACAGAGATTGACTTGCCTCTGCCTTCCGAGTGCTGGGATTAAAGGCATGCGCCACTATACCTGGTTTACACTTGACTCTTAATTAAATATTTTCTTTAAATTAAAATGGATATGAGGCAGGTAAAGGCCGAGTCCTTAGGACTGCATGGTAGGAGGAGAGAGGCTTCTTCTCTAGATTGGTCCTGTGATCTCCACACACATGCTGTGGCAGACACATGGCCTATACATAGAAATAAAATTAACTTTAAGTAAAATGAATGTAAAGAGTTCTTGATGAACAAGATACCCAAATCTTATTTAAAGATCATACAGTGCTTTACAGAGCCACAGGAAAGCCTGAGAGGAACAGAGGCACCAGCGCTAATGACCCGTCTTTGTTTAATGTTTGCGTTTATTATAGGTAGTTTGCACTCTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTCTTTTTTCTTTTTTAAGGATTATATAAAAACATGATTTCTCTTAATTAGTGATTTATCGATTTAGTTAATGCCTCTTCAGTTCTGCTTGTGAGGTGAGCCCTGCATGTGCCTCATGCTGGTGCAGGAACCTGAGGAAGTGAGTTCGAGGTCTCTTCCTAG
Seq C2 exon
GAGTCCCAGATCATCCGCATATTTGGCACCATGATCAACCAGAAGCTTCAGGACTTTGAAGAAGAGGTAAAGCCCATTGGGAACGTGGTGACAGAGGCTACCCTAGACGTTTACAATACGGTGGTCCAGCGCTTCCTGCCCACACCAGCCAAGATTCATTACCTCTTCAACCTCCGAGACATCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
NA
C2:
PF127752=AAA_7=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGTTCCTGATGGCTGCC
R:
CTTGGAGATGTCTCGGAGGTTG
Band lengths:
294-1546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]