RnoINT0048943 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56121285-56121951:-
Coord C1 exon
chr10:56121794-56121951
Coord A exon
chr10:56121373-56121793
Coord C2 exon
chr10:56121285-56121372
Length
421 bp
Sequences
Splice sites
5' ss Seq
CCAGTAGGA
5' ss Score
1.81
3' ss Seq
CCATCTTCTCCTTCACACAGGTT
3' ss Score
10.17
Exon sequences
Seq C1 exon
ATGAGCAACGAGATTATCCGTCTATGCTGTCACTCCGTCTCTTTGGACCGAATCTTTGAGGGCTATGTCTCTTCCAGCAAGGAAGACCTGCAAGGCTGCATTTCCTGTTGCCACGCCTGGAAAGAGCACTACCTGCGCGCCGTACAGATGCATACCCA
Seq A exon
GTAGGACGGGTCCCTAACATCACATATATGAAACACCCTTGACATTCCTGCACGGGAGAGACTCTGACTCTGCATGCCTTCCCCGTTTGGGGACTTTATTTTTTTTCTAGACCTGGGAGTCTCTACCCCCCACCCCTAGGCTAAGGATCTGTTTGAATGCAGATGGTCTGGATCCTAGCCCTGAGGTGGTCTTGCCTCTTCCAGGAACCTCAAGTGGTCCTTTCCTCCTCCCACGATCACATGGTCTGAAAGGCTACCTTCTAGAAGTTGGGGCTGTGTTCTCTGATGTTCTGTTCACCTCTGGTCTTTCCTCTCAGGGTTCAGGGACGTTCTCTTCAGGCTCACACAGTGAGGTTTTGTGAGGCAGGCTGGTCTTCAGTGTCTCTCAACTTTGATTCAGCCCATCTTCTCCTTCACACAG
Seq C2 exon
GTTCTCCAACCGGGGCTGGGTTCTAGACCAGACGAGCATATTTGCTCAAGTAGACGCCTTTGTGCAGCGCTGCAAAGATCTTATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.1=100)
A:
NA
C2:
PF083857=DHC_N1=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCAACGAGATTATCCGTCT
R:
CTCAATAAGATCTTTGCAGCGCTG
Band lengths:
246-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]