RnoINT0049291 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52371082-52375508:-
Coord C1 exon
chr10:52375381-52375508
Coord A exon
chr10:52371310-52375380
Coord C2 exon
chr10:52371082-52371309
Length
4071 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
GGGTCTTTCCTTCCCGACAGAAC
3' ss Score
10.12
Exon sequences
Seq C1 exon
GAAAGAAACTCGGATATACATTCAACAATCGGAACTTCCACAACGTGTCTCTAGGGCAAGGTCAAGAAGTAGTTGCTGAGGCTGCACTGGACCTGGCTGCTAAGAAAGGTCACTGGGTGATTCTGCAG
Seq A exon
GTACCGTCCCTCTGCCCAGATCTGGATCAGTCATGCCTTCCTGCCCATTCAGGCTGCACCTCATAGACTCTGGGCTTCCTAAGCCCTCTGACTATTACCTACCTGTTCCTCCGTGCCTTGACTTCCTACTCTGCTCTAACCCTCCTCAGTCTCACATCTTCTTCCCAAAACCTCCTCCAATAACTCTTCCCCACACCCACTTGACCATTGTCTCCAAACAGTTCTAAGTTCCACGCAAAAAAGGAAATAGATTTCGCTCCGATTACGCACTCAAGAAATTAGCATTTGATCAAGGTCCATAGCAGCTGGACACTTTCAACGGCTGAGCTCTCCCATGAATGCCATGGTGCTCTACTCCCATTTACGTTCCTGCTGTGTTGTACGTTCTGAGTCACGTACCCATAAGACTAAAACTTAGCCTCTCCACTGGGAGCTTGTGTCGTCTGGAAACGAGGGACCCTACTGCCGTGATTCCATGGAACAAGAGTAGGCGGGGGTAGAGGGGGATCTGCCATTCACTCTTCTATCAAAGCCTGTCCCCCGTGCAGCTTATTTAGAGACTGTAGCTGAGTCAGAGCAGCGGGCTCATTATTCTTTTCTCTTAAAGCACTCCGCAGTCAGTCCCATCGGGACTGGTTTGTCAGGACATGTTCTCGCCAAATTTCCTTAGAGAAAATGATGTTTCTGATTTACCTTTACCATCACGATCACAGCCTTCAACTGTTCAACAAAAGCTCTGGGGTAGGGGGTAGAGAGATGATTAAGTGGTTAAGAGAGCTTGCTGTTCATTCAGTGGACCACAGCTCCATTTTCAGTACCTTTATGAATATGAAAGCATATTCTTTCTCCAACACACACACACACACACACACACACACACACACACAAATAAAGTCATTTTTGAAAGCCTATTGGGTGTGGGAGAGTAGCCAGAGAGTAACGGGGACGGTGCATATGTATAGCACATGTATTTTTACATGTCGGGTGACAGAATTAATGAGGAAACTAAAGAAAGACTATCTGCAAAAGCCAGTCATTCACCCATCCTGACTTCATTACCAAGAACTTCATCAATCCCATGATTACTCACTCCTCCACATCTTGCTACTGACTTCTCCTTAATTATACTTTTATTTATGGGGAGCCCGGCAGTGGAAAGATCTGCCATTCCCTGAAACTACTTTTTCGGGAGTAGTAGGAATCCCAGGAGAAACAGCAACAACAGCTGGAACCCCTGCTTGTCCATGCGCTGGGAGGTAAAGTCACCAAGTCTGTAGATTCGTCTACCAGGAGACCTGCTCCTGGCCACTAGAGAATAAAGGAACTGAGCCTCCTGGTATGGTGATCAGAGTCCATTTCTGAAACTGTGGTTCTGCCTCCAACAAGGTTCCTCAGACAAGGAACTGAGTTTCCTTCCTTTGTACCTACTGGGTACACAGTATGCCCACATCACATGTTGATGTGGATTCCAAGCTCTGAGTTCAAAACCCCCTCTTTAATCCTTGGTGACAGAGCATCCCCAAGGGAAACAGTTTCTCTGGATAAGACCTAGTTACCTGAGAGCTCTGTTTTTCCTCTCAAGTGAAGCATTGTGGGTATTGACTACAAATCACTTGTCTGAACTGCAGAGTCAGGGTGGAAGAGAAGGGCCTCTCAAAAGTTATATCTTCCTGAGACTCCTAGACATTCTGGTTTTAATATTTACCTGGTGTTGCTGAGCATAATGGCACTCACATGCAACCCCAGTAGGCAGGAAGATCTTGAGTTTGAGGCCAACGTGGGCTACCTATCAGGTTTCAGGCAAACATGGGCTATAAAGTGAGAGCCTGTCTCAATGACCCACCCCAAAATAGTTCCTGGAAAAGGGAAAAACCACAGTGAAATTATTCTCCTTTCAAAATGTATACACGGAACAGTATCAACCCTTTCAAGAAGAGTTCGGCCTCAATGATCGAGTGCTTCTAAGAGCTTGAGACACTGAGCTCTTGTTCCAGTCACTTCTCCTCCACTGGATCTAACAACTATTCCATCTCATGTCATCCCAGGGAAGGCTATTTAAGGTTGCAACCAAAAACAGTCAGTAATTTGTCAAGAGTACTCGTTTCCTAGGACCTGAGGACCCAGGCAAGGCTCAGGAGATCTCAACTCTTCCTGGCTAATCGCTGTGGGTTGAGTTTCCCCAGTTCTGGAAGCCCCATGGATCCTTGAATACCCGCAGTGTTCCTTCCACAGAAAACAGGTTTTCCTCTCAGCCCTACCCTGCTCTGTCCTGCTCTAAGGGACTTGAGCTCTGTGGTGCCTATGGAATTGCTCACTGCTAGCTTGCTTGTATTACCACCCAACAGGAACCTGGGCTCTCCAGAAAGCCCACTGAACTCTGATTCAGTCATGTGATTCTAAATGATCTCCTTCACAATGTTTCATGTCACCATCTGCTATAATCCGCACATAGCAGTTTCTAGTATAAAGAGCCCTTTCAAATTCATTGCCCACAGGTCTTTGCAGCAGCCATGAAGTATGGCAAGCATGAATTGTTAACTTCTTTTCTATAGAACCAAAAGCAGCAGAGGCCAGATTACTGTGGTCCTTGTACTCTGCTCAGTGTTGATTTGTGTATTTAAAGCTCTGCAAGTCTACTTGCTCAAATATTGACTGAGGAGCCTTTATCTATTCATCATAATGAAATATATTGCCACGAAACCACAGGATCTACTTAGGAAAAGAAAGGTGCTGTTTCCAAATGACTGTGAAGAACTAAGTCTTGGTAAAGAAAAATAGACAGGAATCAGATTTAGGATCAAAAGACAGGCTCAAAAGCTAGACAGAGAAGCCCATGACGAGAGTAGGGACCTTTGTGGGCCATTGACAGCAGTGTCTCCCTGTGTCTTAGGGAGATAATTTTAGTGGCAATTAGAAGAATGGTTTGGTGAGCAGAAAGCTGTGTAGAGAGAGTTTGAATCTTTACCTTTCAAACATGAATACATATGCACTGTACTAGCAGGTCCCATTAAAATGTGCTAACTCAGTAAGTCTGAATGGGGCCTGAGATTCTGCTCCCAAGTACCGCAGCTGTATTCATACCTTCTAGTTCTGAGGGGTTCAGATTACCCAGGCAGTTAGAGAATTAGACTTAAAATGTGATTGCATTTTAGACTCAAAAGTATAGTTCCTGGACCCACAGTAAGGTACCATCTAGGAGGTTCTTAGAAATACAAATAGCCAGTCTCTACTCACCACTGAAGCGGAAGCTGCAAGGAGGATCCAGTAATCTGTGCTTGAAGCCATCCTCCAGGGGATTCATACGCAGTCAAGTCTGAGACCACAAATGCTAGATTTATGATTATCAAAGGACAGAGTTGAATTGTATGTTGCTGTGGGGGGTGGGTCACCATTACTGGGTAACTCTATGCTACTCAAGGCTATGAATGACCTGGCAGTCCAGGAATAAACAACTCTACTGAATACTTTAATATGTGTGTTATAGGTCGAGGGCACAGCTCAGTAATAAAGTGCTTTCTTGGCATGCGTGAGACCTATGTCCAATCCCTAGCACCACCAAAAACAATAACTGTACAGGCGAAGGTGGTTAAGTACTACACTGTATCTATTTTATTGCAATTTTTAAAAAAATTACTGAAAATTAAATCCAAACAAAAACAAAACAAAACAAAACAAAAACCTATAGGTAACTGAGCACTGCTGAGAGAGAAACAGTCTTCTCCACGGACAAGTCTCCAGTAGCAAGTGGTCAGCCTTGAAATCATTTACACACAGAGAACACTAAACAGACTCAGTGGGCTGTCTTTATATATTTATGCATTTGTATATGTTTATGTGTACATAAGAACAATAATCACAGGGAAAGGCCGTGAATTTGAGAGGGAGTATGGGAGGGATTGAGAGGAGGGAAGGGAATGGGAAATGGTGTAGATGATATATATAATTTTTAAATTATCTAAAAATGATAATGAAAAGCTTGGTGTCCCCTCTAGCTGCCCACCTGATAACTGTTTACTGCTAATAGATATAAGCATGTGTCTACTGGGGGGGGGGGTCTTTCCTTCCCGACAG
Seq C2 exon
AACATCCACCTGGTGGCCAAATGGCTCAGTACCCTGGAGAAGAAACTGGAGGAGCTCAGCGAGGAAAGTCACCCAGACTTCAGGGTCTTCATCAGCGCCGAGCCTGCACCCTCCCCTGAGGGCCACATCATTCCCCAGGGCATTCTGGAAAACTCCATTAAGATCACCAACGAGCCCCCCACAGGCATGCATGCCAACTTACACAAAGCCCTGGACAATTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(16.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]