RnoINT0050550 @ rn6
Intron Retention
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8961947-8962288:+
Coord C1 exon
chr3:8961947-8962046
Coord A exon
chr3:8962047-8962189
Coord C2 exon
chr3:8962190-8962288
Length
143 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGATGCGCCTCTTTTCCCAGAAT
3' ss Score
8.19
Exon sequences
Seq C1 exon
GCCCACACACAGCAGTGGGCACTAAATACGGGATGCCCTCCAGCCATTCCCAGTTCATGTGGTTCTTCTCTGTCTATTCCTTCCTTTTCTTGTATTTAAG
Seq A exon
GTGAGAACCCCACCCACACCCTGCCGGGTAGCCATGCCCTGCTGGGGACTGCCTCACTAAGGCTTTTGAATGGGACCTGGGGCTGTTGGGAGGCCTGGACTCAGGTTGTAAGCTGAGGCTGTCTGATGCGCCTCTTTTCCCAG
Seq C2 exon
AATGCACCAAACAAATAACGCCAGGTTCCTGGACTTGCTGTGGAGGCATGTGCTGTCTCTAGGGCTCCTCACCGCGGCCTTTCTAGTCTCCTATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663:ENSRNOT00000064557:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(30.6=100)
A:
NA
C2:
PF0156916=PAP2=FE(30.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGGCACTAAATACGGG
R:
TAGGAGACTAGAAAGGCCGCG
Band lengths:
182-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]