RnoINT0051397 @ rn6
Intron Retention
Gene
ENSRNOG00000016526 | Dsg2
Description
desmoglein 2 [Source:RGD Symbol;Acc:1311143]
Coordinates
chr18:15598546-15599199:-
Coord C1 exon
chr18:15599057-15599199
Coord A exon
chr18:15598774-15599056
Coord C2 exon
chr18:15598546-15598773
Length
283 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCTCCTGCTTGCTTTCAAGGTC
3' ss Score
10.43
Exon sequences
Seq C1 exon
GTACGTAAAAGTGCAAGACACCGACAACTGGGTCTCTGTGGACTCTGAAACTTCAGAGATTAAGCTGGTAAAGATTCCCGACTTTGAATCTCGACACGTCCAGAATGGCACCTACACTGTAAAGGTTGTCGCTATATCCAAAG
Seq A exon
GTAAGTCAAATAAGCACATGGTTTTCGTGGTTAAATGCATTTAGATTTTAACTTCCGCCACCAGAAGTGTTTGTTCTGACTGTGTATAAAGGGCTCATCTCGTCAGTGCGCCTGCCCATTTTTGCTTATTTTGTGACTTCGCACTGATAGGAACCTGAGAGCCAGCTGTGGGGGTTATCCCAATGCCTAGCACCCACTCTTTATCTGATTGGCTTCTGGACTGACCTGTGTCTATGGTCGGTGATGCACTCAGAGTCTGAACTCTCTCCTGCTTGCTTTCAAG
Seq C2 exon
GTCACCCTCAAAAAACCGTCACTGGCACCATCCTTATCAATGTTGAAGACGTCAATGACAACTGTCCCGTACTGGTGGACTCAGTACGGAGTGTCTGTGCGGATGCACCGTATGTGAACGTCACTGCGGAAGACTTGGATGGACCCCGGAACAGTGGGCCATTCACCTTCTCCATCATTGACCAGCCTCCCGGAACGGCACAGAAGTGGAAAATCACGCACCAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016526:ENSRNOT00000022270:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.1=100)
A:
NA
C2:
PF0002812=Cadherin=PD(16.0=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACACCGACAACTGGGTC
R:
GAGAAGGTGAATGGCCCACTG
Band lengths:
302-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]