RnoINT0051400 @ rn6
Intron Retention
Gene
ENSRNOG00000016526 | Dsg2
Description
desmoglein 2 [Source:RGD Symbol;Acc:1311143]
Coordinates
chr18:15591423-15594635:-
Coord C1 exon
chr18:15594514-15594635
Coord A exon
chr18:15591771-15594513
Coord C2 exon
chr18:15591423-15591770
Length
2743 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
GAGCTGTGTTCATCCCCTAGGTG
3' ss Score
9.41
Exon sequences
Seq C1 exon
TGGTGCCGCTCTTGTTGTTGATGTGCCACTGTGGAGAGGGCGCCAAAGGCTTCGCCCCCATTCCCGGGACCATAGAGATGCTGCATCCTTGGAACAATGAAGGGGCACCACCCGAGGACAAG
Seq A exon
GTCAGCCCGCAGACAGTGATGCGATCTGCTCCTGGTCTGACTTTATTGGGGGACATAGGGAGTTTGGACAATCTCACTCTATAACTCAGACTAGCCTTGAACTCAAAGCAATCTTCCTGCCTTAGACTCCCAAGTGTGGGGATTACAGGTGTAAACCACCAGCTCCTGTTAAGAGTTTAAAGGTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTAAAGACAGCAACATAAAATTTAAAAAAAAGAATATTTTTGGGGTTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCACAAGGTCCTGGGTTCGATCCCTAGCCCCGAAAAAAAAGAAAAAAAAAAAAGAGTTTAAAGGTGTCTTACTTAGAGGGTGTTGGCAACACTTTTCGTCATGAAAGACTGACACAGCCATTACATTGTGAAATATATACGTTAAGAGCTGGCACTTGACTCTTAACGTCCTTGGGATCTAGGAAGTAGCAATGTCTGTAGCACTGAGCCCTACATCTGTAAGATCTGACAGTGTCACAATGAAATTGGACCCACTGCAAAACTGACCACGTGCTTGCTGGTGAGGAAGAAGCCCTACCATACCTTTCAAGGTCGCAGGAACCCGTGTGGATGTTGTAGTGTGACGGTTGAAGACAGAGAGCACTGGTCATCAGATCTCCTGCATATGCCTTCGTTGAACGACAGGTTCAAGTGATGGCATGTTCTCTCTCGTTTGCCAGAGCAGAGTAGAAAGGCTTTGACTGTACTGTGGTATGTCCTGTGCTAATGAGAGTGCAGACCATGAGTCAGCAGGTGACTAAACTGTGTAGAGCAAAGGACAGGGAAAGCACCCCGTTATTAAGTGGTCCTTTCAATGCCAGGATTGGGTCCACTCCGTTCTTCAGTATATTCCGCTGACAGAGGTGAACTCCAACTCCAAGGCGCTTATGAAGTGTGCCCAAAGCCCTTTGTCTACTGCTTGATAGTTAGCTCCCCTGTCTCTCCATTATGTCTTGACCCTGGGCCTTTCCCCTTCATCTGCCACAAGCTCCATTTCCTGCAGGATATATGTATCAATGTCAAGTGACAGGAAGCCTGAGTGCCGTCAAAGTGGTGACTCTCCATGTTGATCACTTCCCTTGTTACTACAGCCAAAATAAAATGACAAAGCGATTTAAGGAAGGAAAGGCTTAGTGCTTGAGAGATACAAACCATCACGGCAAGGAAGGCTTGGTAGCTTAAGTGTGAAGAAGCTGGTCACGTTTCATTTGTAGTCTGGAAGCAGAGAGCAGTCAGGGAGTGGTGTCAGGCTATAAAACCCCAAGGTCTACCTGCAGCGGTCCACTTCCTTTAGTGAAGGTCCGCCTCCTACTGGTTCCACAATCTTCCAAAGCATCCCGCCACCTGAGGACCAAGTAGTCAAACACATGAGCCTGTGGGGGCATTTCATACTCAAACGACAACCCTATAACCCCAGTAGTTGGGAGACTGATGGAAAACAGTCACAAACTCAAGACCAGTCTAGACTACACAGTGAGATTTTCTCTCAAACCACTGTCTTGGGATTTTACTGCTATGAACAGGCACCATGACCGTGACAAGTCTTATAAGGGACAATGTTTAATTGGGGCTGCCTTACAGGCTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCAAGGCAGCATCCAGGCAGGCCTGGTGCAGGAGGAGCTGAGAGCTCTACATCTTCATCTGAGGCTGCTAGTGGAAGACTGACTTCCAGGCTGCTAGGGTGAGGGTCTTAAGGCCACGCCCACAGTGACACACCCACTCCAACAAGGCCACACCTCCTAATAGTGCCAGTTCCTGGCCAATAGTATACAAACCATAGCAACGACTAAACAAAGATAAAAAAAAATAATAATAAAACTGGGTAAATGTGAGTGGTCCTGGATTGATCAACATGGAGATCGTTCAGCACATTCCCCCACTCTTCCTTCTCCCTGCTCCTCCACAGATGGGTTTCATCCCAGACACTAGCTCCTGTCCTCATACTAGAGCAAGCAGCTGAGGCATCATGAACTGCTCTGTAGGCACATTTCTTGGTCCTCATTGGTCAGCAGACAAGAGGCTCTCTCTATCTCGTAGCAATGGATGATTGGAAATAGACTCCATGTTGAATGACCATGTGCCCAGCTGAAATTTCAGGGTTCTGTAACTGTCACACAAGTCCCCAAAGAGGAGGTGGGTGCCACTGGTTCTGGTTAAGAGGGTAAACCAAGTCCACATAAAGAAATCTGGGCTTTAGGGTTGGGGATTTAGCTCGGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGTTCCGGAAAAAAAAAAAAAAAAAAAAGAAAAGAAATCTGGGCTTTGTGTCGTCTTCTGGTTGTAGTCAGCTCTAAAGCAGGAAGAAAGAAATCCTTTGCAAGACCCCAGTGGATGTGTCCCGCCCCACCCCACCCCACCCCCGCCCCACCCAACTGTTTTCCTAATCTGCTCAGGAGGAAATAGCTCATCTCTCATTCTGTCCACTTGACTCTCGCATCTTCCTGCCAAGTACACTGACTGACCCTTTGTCCTTCGGGTTCATTTCTGAGCTGTGTTCATCCCCTAG
Seq C2 exon
GTGGTGCCATCGCTTCTGGTGACTGATCACGTGGAGAACTCGGGAGTGAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGTAGGAGGGGTGAAGCTCAAGGAAGGCGTGAGTAGCTCAGCCTCCATTACCAAAGGGCAGCATGAGCTAATTGAGGTTGACGGAAGATGGGAAGAACACAGAAGCCTCCTCACTAGTGGGCTCACTCACCATGTAGCCACCGCAGGATCCATCGCTGCCAATGACACCACAATAAGGACAACAAGAGCCACTGGGGCGTCCAGAGACATGAGCGGGGCTCGAGGAGCCGTTGCCATGAATGAGGAACTCTTGAGAAGTTACTTCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016526:ENSRNOT00000022270:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=NA C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104912=Cadherin_C=PU(38.3=35.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]