RnoINT0051422 @ rn6
Intron Retention
Gene
ENSRNOG00000016632 | Dsg3
Description
desmoglein 3 [Source:RGD Symbol;Acc:1592103]
Coordinates
chr18:15670950-15672012:-
Coord C1 exon
chr18:15671846-15672012
Coord A exon
chr18:15671079-15671845
Coord C2 exon
chr18:15670950-15671078
Length
767 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TTCTTTATCTCCAAATTTAGCAA
3' ss Score
6.34
Exon sequences
Seq C1 exon
ATTCCCTGGTGATGATCCTAAATGCCACAGACGCGGACGAGCCAAACCATATGAACTCTAAAATCGCCTTCAAAATTGTCTCCCAGGAGCCCGCCGGCATGTCCATGTTCCTCATCAGCAGAAACACCGGAGAAGTCCGCACTTTGACCAGTTCTCTCGATCGAGAG
Seq A exon
GTAAACAAGCTACCTGAAAGCATCAAAACCCTAAACGGCTTGATGGCAAGCAACCCAAGAGAGAGGGGTGCCTCCATCTTGTCTGGGAATACAAACAGAAGTGGGGAAGGCTACCAGCTCTTCACGGAGCCAATCTAGGGGAAACTGTCTCCAGGGTGACAATGGGTTCCTGTGATCGCAACCTTTCACACAACAGCTCAAGTGGGAAAATTAAGGAGGACGCTGGTGTACAGAAACAAAGACTGCACTGTGATTAATTCCTAAAGATTTGGAGAGAATTTTTAGATGAAGAGATTTCTATTTGCTATAAAACTTTGATGGCGTACCTTTTCTCTAGATGTCTCTCCACTTACTTTTACCTCTGCCTGCAAAACATCAAAGAATCCCTTCCTGTCTTCTCTCATCGTCTCTGCCACCACCGTGTATCTCCACCGCAACGGGCTACTCAGATCCATTACTTTCACACATTTTCCCCCAGTAGATCGGTAGGGAAAGTCGACAAGGGGGATTCTCTGAGACAATCACATCCCCCTCATCACTGCAGACCCCCGTTTCCTCTCTGAGTCCACAACACTGCCTTCTTGTAGCCTCTTGTAGCTGCTTCCACCCAGTCCTCTGGAGCCCCACCAGCCTGTCTCTGCCATGGACAATGTGTGAGAGCCATGATTCATAGACTTAAATATTTTCACTATCTTATCCAAGGAAAGCAACTACCGGCCATTCTTGATCTTTGACAGTTAACCTTTGTTCTTTATCTCCAAATTTAG
Seq C2 exon
CAAGTTGGTAGCTACCATTTGATTGTGAGCGGTGCAGACAACGATGGAACAGGACTGTCGACTCAGTGTGAATGTAGTATCAAAATTAAAGATGTCAACGACAACTTCCCAGTGCTTACGGACTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016632:ENSRNOT00000022584:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(56.7=100)
A:
NA
C2:
PF0002812=Cadherin=PD(29.9=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGGTGATGATCCTAAATGC
R:
CTGCGAGTCCGTAAGCACTG
Band lengths:
294-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]