RnoINT0055171 @ rn6
Intron Retention
Gene
ENSRNOG00000013102 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:RGD Symbol;Acc:69266]
Coordinates
chr3:2622716-2623445:+
Coord C1 exon
chr3:2622716-2622886
Coord A exon
chr3:2622887-2623079
Coord C2 exon
chr3:2623080-2623445
Length
193 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
ATCCTCCTCTCTCTTCCTAGGAT
3' ss Score
12.35
Exon sequences
Seq C1 exon
GCTGCAGACACGGCTGTCGGCTGGGCGCTGGGCTACATGCTGAATTTGACTAACCTGATTCCTGCCGACCTCCCCGGACTACGCAAGGGCACCCACTTCAGCTCCTGGGTCGCTCTCCTGCTGCTCTTCACAGTCCTGATCTTGGCGGCGCTGGTCCTGCTCCTGCGCCAG
Seq A exon
GTGCGTTCTGCCAAGTCTCCAGGCGCCCTCTAGGGGTGAACTGGGAGCCTCTCCCAACTCCCTACTATCCCTCCCTTCCAGAGGGCATCTCTGACCCTGAAGCAGCCTGGAAACCAACGTTCCCTATCTACATTCACAGAAAGCCTACGTGGGCAGCCCTGAGTTCTCAATTAATCCTCCTCTCTCTTCCTAG
Seq C2 exon
GATGTCAGGTCTCAGCCTGTGACTCAGGGTGAGGTCCATTCGGAGTGGGACTTTTGTTCTGATCTTCAGGGCCCTGGGAACTTTCTGTCTGGGCCTTTAGAAAGGCAGGCACCAGAGCCTACAGGCTGGGAGTCAGTTCCATGCCTACTTGTAAAAACTTTTGTAATAAAAGATTTTTCCTAGAGCAGCGAAGTGTTCCTAGGGCGGGGCACCCTTGGTCGCCTGTTCTGCCTTCCAGCTGTGTTGTTGGTTATTTGGGTGAAACCTGGTTCCAAGATACTGACTTTTCTTGCTTCCTCCCTTTTTGTACCAGGCCTGAGGCAATGGAGGCACTCCTACCTACTCTGCTCTGGGGTTGTCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013102:ENSRNOT00000017829:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PD(6.6=49.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTCTTCACAGTCCTG
R:
GGAACACTTCGCTGCTCTAGG
Band lengths:
253-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]